AP2/EREBP transcription factor family genes are differentially expressed in rice seedlings during infections with different viruses
Paper Details
AP2/EREBP transcription factor family genes are differentially expressed in rice seedlings during infections with different viruses
Abstract
AP2/EREBP transcription factor family members are important regulators of plant growth, development, and biotic stress responses. Expression profiles of the 147 AP2/EREBP gene family members were studied in rice infected with Rice transitory yellowing virus (RTYV) and Rice dwarf virus (RDV strains, RDV-D84, RDV-O, and RDV-S. Microarray analysis showed that 30% of the OsAP2/EREBP genes were differentially regulated during virus infection compared with the control. Rice infected with either RDV-S showed the highest number of up-regulated OsAP2/EREBP genes, while RTYV infected plants had the lowest. These results correlate with the severity of the syndromes induced by the different viruses. Three of the five genes in the RAV subfamily and B5 subgroup were more highly expressed during RDV-S and RDV-O virus infections, while all of the genes in the DREB subfamily or A1 to A6, B3 and B4 subgroups were down-regulated during RTYV infection, suggesting roles in response to virus infection. The number of genes activated during RDV infections was greatest during infection with the S-strain, followed by the D84-strain and the O-strain, with three OsAP2/EREBP genes up-regulated during infection by all three strains. A common set of 3 genes (Os04g46220, Os05g39590, and Os07g22730) showed higher expression during infection by at least three different viruses, of which, Os04g46220 showed up-regulation during infection with all viruses.
Agarwal P, Agarwal PK, Joshi AJ, Sopory SK, Reddy MK. 2010. Overexpression of PgDREB2A transcription factor enhances abiotic stress tolerance and activates downstream stress-responsive genes. Mol. Biol. Rep. 37, 1125–35.
Barrett T, Troup DB, Wilhite SE, Ledoux P, Rudnev D, Evangelista C, Kim IF, Soboleva A, Tomashevsky M, Marshall KA, Phillippy KH, Sherman PM, Muertter RN, Edgar R. 2009. NCBI GEO: archive for high-throughput functional genomic data. Nucleic Acids Res. (Database issue) 37, D885–D890.
Büttner M, Singh KB. 1997. Arabidopsis thaliana ethyleneresponsive element binding protein (AtEBP), an ethylene inducible, GCC box DNA-binding protein interacts with an ocs element binding protein. Proc. Natl. Acad. Sci. USA 94, 5961–5966.
Catinot J, Huang JB, Huang PY, Tseng MY, Chen YL, Gu SY, Lo WS, Wang LC, Chen YR, Zimmerli L. 2015. ETHYLENE RESPONSE FACTOR 96 positively regulates Arabidopsis resistance to necrotrophic pathogens by direct binding to GCC elements of jasmonate – and ethylene-responsive defense genes. Plant Cell Environ 38, 2721-34.
Dong L, Cheng Y, Wu J, Cheng Q, Li W, Fan S, Jiang L, Xu Z, Kong F, Zhang D, Xu P, Zhang S. 2015. Overexpression of GmERF5, a new member of the soybean EAR motif-containing ERF transcription factor, enhances resistance to Phytophthorasojae in soybean. J. Exp. Bot. 66, 2635-47.
Giri MK, Swain S, Gautam JK, Singh S, Singh N, Bhattacharjee L, Nandi AK. 2014. The Arabidopsis thaliana At4g13040 gene, a unique member of the AP2/EREBP family, is a positive regulator for salicylic acid accumulation and basal defense against bacterial pathogens. J. Plant Physiol. 171, 860-67.
Gutha LR, Reddy AR. 2008. Rice DREB1B promoter shows distinct stress-specific responses, and the overexpression of cDNA in tobacco confers improved abiotic and biotic stress tolerance. Plant Mol. Biol. 68, 533-55.
Gutterson N, Reuber TL. 2004. Regulation of disease resistance pathways by AP2/ERF transcription factors. Curr. Opin. Plant Bio. l7, 465–471.
Havelda Z, Várallyay E. 2008. Plant virus infection induced persistent host gene down-regulation in systemically infected leaves. Plant J. 55, 278–288.
Huang H, Chen S, Li H, Jiang J. 2015. Next-generation transcriptome analysis in transgenic birch overexpressing and suppressing APETALA1 sheds lights in reproduction development and diterpenoid biosynthesis. Plant Cell Rep. 34(9), 1663-80.
Jain M, Nijhawan A, Tyagi AK, Khurana JP. 2006. Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR. Biochem. Biophys. Res.Commun. 345, 646-51.
Jisha V, Dampanaboina L, Vadassery J, Mithöfer A, Kappara S, Ramanan R. 2015. Overexpression of an AP2/ERF type transcription factor OsEREBP1 confers biotic and abiotic stress tolerance in rice. PLoS One 10, e0127831.
Kitomi Y, Ito H, Hobo T, Aya K, Kitano H, Inukai Y. 2011. The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. Plant J. 67, 472–84.
Koo YJ, Kim MA, Kim EH, Song JT, Jung C, Moon JK, Kim JH, Seo HS, Song SI, Kim JK, Lee JS, Cheong JJ, Choi YD. 2007. Overexpression of salicylic acid carboxyl methyltransferase reduces salicylic acid-mediated pathogen resistance in Arabidopsis thaliana. Plant Mol. Biol. 64, 1–15.
Li CW, Su RC, Cheng CP, Sanjaya, You SJ, Hsieh TH, Chao TC, Chan MT. 2011. Tomato RAV transcription factor is a pivotal modulator involved in the AP2/EREBP-mediated defense pathway. Plant Physiol. 156, 213-27.
Maruyama Y, Yamoto N, Suzuki Y, Chiba Y, Yamazaki K, Sato T, Yamaguchi J. 2013. The Arabidopsis transcriptional repressor ERF9 participates in resistance against necrotrophic fungi. Plant Sci. 213, 79-87.
Nuruzzaman M, Sharoni AM, Kikuchi S. 2013. Roles of NAC transcription factors in the regulation of biotic and abiotic stress responses in plants. Front. Microbiol. 4, 248.
Pre M, Atallah M, Champion A, De Vos M, Pieterse CM, Memelink J. 2008. The AP2/ERF domain transcription factor ORA59 integrates jasmonic acid and ethylene signals in plant defense. Plant Physiol. 147, 1347–1357.
Quan R, Hu S, Zhang Z, Zhang H, Zhang Z, Huang R. 2010. Overexpression of an ERF transcription factor TSRF1 improves rice drought tolerance. Plant Biotechnol J 8, 476–88.
Ramirez BC. 2008. Tenuivirus, in Encyclopediaof Virology (Third Edition), edsMahyand BWJ, van Regenmortel MHV (Paris: CNRS) 24–27.
Saeed AI, Bhagabati NK, Braisted JC, Liang W, Sharov V, Howe EA, Li J, Thiagarajan M, White JA, Quackenbush J. 2006. TM4 microarray software suite. Methods Enzymol. 411, 134–193.
Satoh K, Shimizu T, Kondoh H, Hiraguri A, Sasaya T, Choi IR, Omura T, Kikuchi S. 2011. Relationship between symptoms and gene expression induced by the infection of three strains of rice dwarf virus. PLoS One 3, e18094.
Satoh K, Yoneyama K, Kondoh H, Shimizu T, Sasaya T, Choi IR, Yoneyama K, OmuraT, Kikuchi S. 2013a. Relationship between gene responses and symptoms induced by Rice grassy stunt virus. Front. Microbiol. 4, 313.
Satoh K, Kondoh H, De Leon TB, Macalalad RJ, Cabunagan RC, Cabauatan PQ, Mauleon R, Kikuchi S, Choi IR. 2013b. Gene expression responses to Rice tungrospherical virus in susceptible and resistant near-isogenic riceplants. Virus Res. 171, 111-20.
Shamir R, Maron-Katz A, Tanay A, Linhart C, Steinfeld I, Sharan R, Shiloh Y, Elkon R. 2005. EXPANDER – an integrative program suite for microarray data analysis. BMC. Bioinformatics 6, 232.
Sharoni AM, Nuruzzaman, M, Satoh K, Shimizu T, Kondoh H, Sasaya T, Choi IR, Omura T and Kikuchi S. 2011. Gene structures, classification and expression models of the AP2/EREBP transcription factor family in rice. Plant
Cell Physiol. 52, 344-60.
Shibata Y, Cabunagan RC, Cabauatan PQ, Choi IR. 2007. Characterization of Oryzarufipogon-derived resistance to tungro disease in rice. Plant Dis. 91, 1386–1391.
Shimizu T, Satoh K, Kikuchi S, Omura T. 2007. The repression of cell wall- and plastid-related genes and the induction of defense-related genes in rice plantsinfected with Rice dwarf virus. Mol. Plant Microbe. Interact. 20, 247-54.
Sun ZM, Zhou ML, Xiao XG, Tang YX and Wu YM. 2014. Genome-wide analysis of AP2/ERF family genes from Lotus corniculatus shows LcERF054 enhances salt tolerance. Funct. Integr. Genomics 14, 453-66.
Zhang L, Gu L, Ringler P, Smith S, Rushton PJ, Shen QJ. 2015. Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells. Plant Sci. 236, 214-22
A. M. Sharoni, M. Nuruzzaman, M. A. Rahman, R. Karim, A. K. M. R. Islam, MM. Hossain, M. M. Rahman, M. S. Parvez, F. M. A. Haydar, M. Nasiruddin, S. Kikuchi (2017), AP2/EREBP transcription factor family genes are differentially expressed in rice seedlings during infections with different viruses; IJB, V10, N3, March, P1-14
https://innspub.net/ap2-erebp-transcription-factor-family-genes-are-differentially-expressed-in-rice-seedlings-during-infections-with-different-viruses/
Copyright © 2017
By Authors and International
Network for Natural Sciences
(INNSPUB) https://innspub.net
This article is published under the terms of the
Creative Commons Attribution License 4.0