Phylogenetic analysis of waxy genes in wheat’s using bioinformatics methods
Paper Details
Phylogenetic analysis of waxy genes in wheat’s using bioinformatics methods
Abstract
Quality of wheat is depending on three waxy genes. In order to identify variation and phylogenetic analysis of waxy genes in wheat and wild ancestor we used bioinformatics methods to clarify them. Results indicated that there is high variation in nucleotide level among our sequences and Triticum monocuccum with Triticum urartu show 97.3% similarity and Triticum turgidum with Aegilops triuncialis has only 18.5% similarity. Based on Phylogenetic analysis all samples located in two groups that Aegilops triuncialis alone has been located in a group and other samples in another group.
Guzman C, Caballero L, Yamamori M, AlvarezJB. 2012. Molecular characterization of a new waxy allele with partial expression in spelt wheat. Planta 235, 1331-1339. http://dx.doi.org/10.1007/s00425-011-1577-7
James MG, Denyer K, Myers AM . 2003. Starch synthesis in the cereal endosperm. Current Opinion in Plant Biology 6, 215–222.
Habibi Kaniani B, Bihamta MR, Hassani ME, NajafianG, Darvish F. 2012. Identification of a null allele at the Wx-B1 locus in some of Iranian bread wheat genotypes.in Enviromental Biology 6(10), 2586-2589.
Zeng M, Morris CF, Batey II, Wrigley CW. 1997. Sources of variation for starch gelatinization, pasting, and gelation properties in wheat. Cereal Chemistry 74, 63–71. http://dx.doi.org/10.1094/CCHEM.1997.74.1.63
Yamamori M, Quynh NT . 2000. Differential effects of Wx-A1, -B1 and -D1 protein deficiencies on apparent amylose content and starch pasting properties in common wheat. Theoretical and Applied Genetics 100, 32–38.
Nakamura T, Yamamori M, Hirano H, Hidaka S, 1995. Production of waxy (amylose-free) wheats. Molecular Genetics & Genomics 248, 253– 259.
Kiribuchi-Otobe C, Nagamine T, Yanagisawa M, Ohnishi M, Yamaguchi I. 1997. Production of hexaploid wheats with waxy endosperm character. Cereal Chemistry 74, 72–74. http://dx.doi.org/10.1094/CCHEM.1997.74.1.72
Higgins JA, Higbee DR, Donahoo WT, Brown IL, Bell MLBessesen DH. 2004. Resistant starch consumption promotes lipid oxidation. Nutrition & Metabolism 1.8. http://dx.doi.org/10.1186/1743-7075-1-8
Behall KM, Scholfield DJ. 2005. Food amylose content affects postprandial glucose and insulin responses. Cereal Chem 82, 654–659. http://dx.doi.org/10.1094/CC-82-0654
Oda M, Yasuda Y, Okazaki S, Yamauchi Y, Yokoyama Y. 1980. A method of flour quality assessment for Japanese noodles. Cereal Chemistry 54, 253–254.
Guzman C, Caballero L, Yamamori M, Alvarez JB. 2011. Amylose content and starch properties in emmer and durum wheat lines with different waxy proteins composition. Food Agriculture 91, 1625–1629. http://dx.doi.org/10.1002/jsfa.4358
Murai J, Taira T, Ohta D. 1999. Isolation and characterization of the three Waxy genes encoding the granule-bound starch synthase in hexaploid wheat. Gene 234, 71-79.
Guzman C, Caballero L, Martin LM, Alvarez JB. 2012. Waxy genes from spelt wheat: new alleles for modern wheat breeding and new phylogenetic inferences about the origin of this species. Botany 110, 1161–1171. http://dx.doi.org/10.1093/aob/mcs201
Yamamori M, Nakamura T, Nagamine T. 1995. Polymorphism of two waxy proteins in the emmer group of tetraploid wheat, Triticum dicoccoides, T. dicoccum, and T. durum. Plant breeding 114, 215– 218.
Satio M, Vrinten P, Ishikawa G, Graybosch R, Nakamura T. 2008. Development of a codominant PCR-based marker for the wheat Wx-B1 null allele. 11th International Wheat Genetics Symposium. Sydney University Press.
Miura H, Tanii S. 1994. Endosperm starch proper-ties in several wheat cultivars preferred for Japanese noodles. Euphytica 72, 171–176. http://dx.doi.org/10.1016/S0378-1119(99)00178-X
Nakamura T, Yamamori M, Hirano H, Hidaka S. 1993. Identification of three Wx protein in wheat (Triticum aestivum L). Biochemical Genetics 31, 75–86. http://dx.doi.org/10.1007/PL00020387
Li W, Liu AJ, Sheng UZ, Cheng YG, Pu ZE, Liu XY. 2013. Molecular characterization of waxy gene in Aegilops tauschii. Plant sciences 12(1), 34-39.
Dvorak J, McGuire PE, Cassidy B. (1988).Apparent source of the A genome of wheats inferred polymorphism in abundance and restriction fragment length of repeated nucleotide sequences. Genome 30, 680-689.
Saito M, P Vrinten, T Nakamura. 2010. DNA Markers for Identifying Waxy Mutations and Improving Noodle Quality in Wheat. Japan. International Research Center for Agriculture Science 44, 109-115.
Graybosch RA, KJ Schemmerhorn, Skerritt JH. 1999. An Enzyme-Linked Immunosorbent Assay for the Identification of Wheat Carrying Null Alleles at Genetic Loci Encoding the Granule-Bound Starch Synthas. Cereal Science 30, 159-163
Rodriguez-Quijano M, Va´zquez JF, Carrillo JM , 2004 Waxy proteins and amylose content in diploid Triticeae species with genomes A, S and D. Plant Breed 123, 294–296.
Zahra Maryami, Arash Fazeli, 2013. Phylogenetic analysis of waxy genes in wheat’s using bioinformatics methods. Int. J. Biosci., 3(9), 23-28.
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