Molecular comparison of Clarias batrachus (Linnaeus, 1758) found in India with the species reported from Bangladesh

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Research Paper 01/06/2015
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Molecular comparison of Clarias batrachus (Linnaeus, 1758) found in India with the species reported from Bangladesh

Shobhna, Haren Ram Chiary, Seema Jain, Hridaya Shanker Singh
J. Biodiv. & Environ. Sci. 6(6), 253-257, June 2015.
Copyright Statement: Copyright 2015; The Author(s).
License: CC BY-NC 4.0

Abstract

In the present study molecular comparison of Clarias batrachus from Meerut, India was done with the same species reported from Bangladesh using 16S rRNA. Since, they are morphologically similar, the conservedness in sequences has been studied using ExpaRNA (online software). Besides this, the study is also supported by motif prediction using MEME online software which can be considered as a promising tool for fish species identification. This molecular comparison reveals intraspecific genetic variation in 16S rRNA sequences of C.batrachus from two geographically different locations due to phylogeographic factors.

Day F. 1875-78. The fishes of India: being a natural history of the fishes known to inhabit the seas and fresh waters of India, Burma and Ceylon. Text and atlas in 2 parts. London. Indian Reprint by Jagmander Book Agency, New Delhi. XX+ 778 p. 195 Plates.

Dubey A, Goswami M, Yadav K, Sharma BS. 2014. Development and characterization of a cell line WAF from freshwater shark Wallago attu. Mol Biol Rep (2014) 41, 915–924.

Graham JB. 1997. Air-Breathing Fishes. Evolution, Diversity and Adaptation. San Diego, CA: Academic Press.

Greenwood PH. 1961. A revision of the genus Dinotopterus Blgr. (Pisces, Clariidae) with notes on the comparative anatomy of the suprabranchial organs in the Clariidae. Bulletin of the British Museum (Natural History) Zoology 7, 215-241.

Greig TW, Moore MK, Woodley CM, Quattro JM. 2005. Mitochondrial gene sequences useful for species identification of western North Atlantic Ocean sharks. Fish Bulletin 103, 516-523.

Kon T, Yoshino T, Mukai T, Nishida M. 2007 DNA sequences identify numerous cryptic species of vertebrate: a lesson from the gobioid fish Schindleria, Mol. Phylogenet. Evol. 44, 53-62.

Lemer S, Aurelle D, Vigliola L, Durand JD, Borsa P. 2007. Cytochrome b barcoding, molecular systematic and geographic differentiation in rabbitfishes (Siganidae). Comptes Rendus Biologies 330, 86-94.

Smith C, Heyne S, Richter AS, Will S, Backofen R. 2010. Freiburg RNA Tools: a web server integrating IntaRNA, ExpaRNA and LocARNA. Nucleic Acid Research 38, W373-W377.

Teugels GG, Adriaens D. 2003. Taxonomy and phylogeny of Clariidae – an overview. In G Arratia, BG Kapoor, M Chardon and R Diogo (ed). Catfishes. Enfield, News Hamsphire, USA: Science Publishers: 465-487.

Teugels GG, Sudarto L, Pouyard L. 2001. Description of a new Clarias species from Southeast Asia based on morphological and genetical evidence (Siluriformes, Clariidae). Cybium 25, 81-92.

Thompson JD, Higgins DG, Gibson TJ. 2003. Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions- specific gap penalties and weight matrix choice. Nucleic Acid Research 22, 4673-80.

Timothy L, Bailey, Charles E. 1994. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, AAAI Press, Menlo Park, California. 28-36.

Will S, Joshi T, Hofacker IL., Stadler PF, Backofen R. 2012. LocARNA-P: Accurate boundary prediction and improved detection of structural RNAs RNA, 18(5), 900-14 p.

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