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First record of the Liphyra perplexa (Crusatcea: Decapoda: Leucosidae) in Indian waters, with DNA barcoding data

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Research Paper 01/05/2014
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First record of the Liphyra perplexa (Crusatcea: Decapoda: Leucosidae) in Indian waters, with DNA barcoding data

Jijith Subhash Sudharma, Manjusha Sayd, Saravannane Narayannane, Suresh Kumar U, Ajmal Khan Sayd, Sanjeevan Vellorkkattil Narayanan
J. Bio. Env. Sci.4( 5), 25-37, May 2014.
Certificate: JBES 2014 [Generate Certificate]
Key: DNA barcodeLeucosiidaeLyphiraMolecular taxonomy

Abstract

DNA barcoding has been advanced as a promising tool to aid species identification and discovery through the use of short, standardized gene targets. In the present study a species of crab, Liphyra perplexa was reported and was DNA barcoded for the first time in Indian waters. The study was carried out for identification of Lyphira perplexa (Crustacea, Brachyura, Leucosidae) present in Indian waters by DNA barcoding and by other conventional methods to understand the significance of its distribution. DNA sequence and morphologic data on crab species from marine habitat are summarized. Studies of distribution of any marine organism are very important to know the span of expansion in the oceans and to find out the factors behind that occurrence. In the present observation it describes the occurrence of the pebble crabs in Indian waters there by records a distributional area of the species from Indian waters. Nevertheless, barcoding remains one of the best methods to confirm species identification and mitochondrial COI data has an advantage over an individual dataset because of its high resolving power.

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Alcock A. 1896. Materials for carcinological fauna of India. N. 2. e Brachyura Oxystomata. Journal of the Asia. Soci. of Bengal 65 (2), 134-296.

Aljanabi SM, Martinez I. 1997. Universal and rapid salt-extraction of high quality genomic DNA for PCR based techniques. Nucleic Acids Res 25(3), 4692-4693.

Altschul SF, Gish W, Miller W, Myers, EW Lipman DJ. 1990. Basic Local Alignment Search Tool. J Mol Biol 215, 403-410.

Amaral AR, Sequeira M, Coelho MM. 2007. A first approach to the usefulness of Cytochrome c oxidase barcodes in the identification of closely related delphinid cetacean species. Mari and Freshater Res 58, 505–510.

Apel M. 2001. Leucosiid Crabs of the Genus Hiplyra Galil (2009). (Crustacea: Brachyura: Leucosiidae) from the Persian Gulf and Gulf of Oman, with Description of a New Species. Zoolo Stud 51, 248-258.

Barrett R and Hebert P. 2005. Identifying spiders through DNA barcodes. Canad Jour of Zool 83, 481– 491.

Borisenko AB, Lim BK, Ivanova NV, Hanner, RH, Hebert P. 2008. DNA barcoding in surveys of small mammal communities: a field study in Suriname. Molec Ecol Reso 8, 471–479.

Chopra B. 1934. Further notes on Crustacea Decapoda in the Indian Museum. III. On the decapod Crustacea collected by the Bengal Pilot Service off the mouth of the river Hughli. Dromiacea and Oxystomata. Records of the Indian Muse 35, 25-52.

Clare EL, Lim BK, Engstrom MD, Eger JL, Hebert P. 2007. DNA barcoding of Neotropical bats: species identification and discovery within Guyana. Molec Ecolo Note 7, 184–190.

Deb M. 1998. Crustacea: Decapoda: crabs. State Fauna Series 3. Fauna of West Bengal 10, 345-403.

Ebach MC and Holdredge C. 2005. DNA barcoding is no subsitute for taxonomy. Nature 434, 697.

Fabricicus JC. 1798. Supplementum Entomologiae Systematicae. Proft et Storon, Hafniae, 572 p.

Fabricicus JC. 1775. Systema entomologiae, sistens insectorum classes, ordines, genera, species, adjectis synonymis, locis, descriptionibus, observationibus. Libraria Kortii, Flensburgi et Lipsiae, 832 p.

Fabricicus JC. 1793. Entomologia systematica emendata et aucta. Vol. 2. Christ. Gottl. Proft, Hafniae, 519 p.

Fabricicus JC. 1787. Mantissa insectorum sistens eorum species nuper detectas adjectis charateribus genericis, diff erentiis specificis, emendationibus, observationibus. Christ. Gottl. Proft, Hafniae 1, 348 p.

Ferrara GB, Murgia B, Parodi AM, Valisano L, Cerrano C, Palmisano G, Bavestrello G, Sara M. 2006. The assessment of DNA from marine organisms via a modified salting-out protocol. Cell Mol Biol Let, 11, 155-160.

Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R, 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molec Marine Biolo and Biotech 3, 294–299.

Galil BS. 2009. An examination of the genus Philyra Leach, 1817 (Crustacea, Decapoda, leucosiidae) with descriptions of seven new genera and six new species, zoosystema (2) 31, 280-321

Garcia ML, Morgan CC. 2002. Poromitra crassiceps (Teleostei, Melamphaidae) associated with the 500 fathoms fauna off Argentina. Journl of Appl Ichthyol 18, 216–218.

George S, Meenakshi K, Bijukumar A. 2011. Molecular taxonomy of marine mammals stranded along Kerala coast, India. Current Scien 100, 117–120.

Golding GB, Hanner R, Hebert P. 2009. Molecul Ecolo Resour 9 , 20-122.

Hebert P, Cywinska A, Ball SL, Dewaard JR. 2003. Biological identification through DNA barcodes. Proceedings of the Royal Socie of Lond 270, 313–321.

Hebert P, Stoeckle MY, Zemlak TS, Francis CM. 2004. Identification of birds through DNA barcodes. PLoS Biology 2, 1657–1663.

Herbst JF. 1783. Versuch einer Naturgeschichte der Krabben und Krebse, nebst einer systematischen Beschreibung ihrer verschiedenen Arten. 1 (2-5). Joh. Casper Fuessly, Zürich, 87-182.

Hogg ID, Hebert P. 2004. Biological identification of springtails (Collembola: Hexapoda) from the Canadian Arctic, using mitochondrial DNA barcodes. Canad Journ Zool 82, 749–754.

Hollingsworth PM, Forrest LL, Spouge JL, Hajibabaei M, Ratnasingham S. 2009. A DNA barcode for land plants. Proceedings of the National Academy of Science of the United States of America 106,12794–12797.

Holthuis LB. 1959. Notes on pre-Linnean carcinology (including the study of Xiphosura) of the Malay Archipelago, in DE WIT H. C. D. (ed.).

Holthuis LB. 1962. Forty-seven genera of Decapoda (Crustacea); proposed addition to the official list. Bulletin of Zoolol Nomenclat 19, 232-252.

Hubert N, Hanner R, Holm E , Mandrak NE, Taylor E, Burridge M. 2008. Identifying Canadian freshwater fishes through DNA barcodes. PLoS One 3(6), 24-90.

Hubert N, Hanner R, Holm E, Mandrak NE, Taylor E. 2008. Identifying Canadian freshwater fishes through DNA barcodes. PloS ONE 3, 73-122.

Janzen DH, Hajibabaei M, Burns JM. 2005. Wedding biodiversity inventory of a large and complex Lepidoptera fauna with DNA barcoding. Philosoph Transacti of the Royal Societ of London Seri Biologl Science 1462, 1835–1846.

Jarnegren J, Schander C, Sneli, JA, Ronningen V, Young CM. 2007. Four genes, morphology and ecology: distinguishing a new species of Acesta (Mollusca; Bivalvia ) from the Gulf of Mexico. Marin Biolo 152, 43–55.

Keenan CP, Davie P, Mann DL. 1998. A revision of the genus Scylla de Haan, 1833 (Crustacea: Decapoda: Brachyura: Portunidae). The Raffl Bullet of Zoolo, 46 ,217-245.

Kerr K, Lijtmaer DA, Barreira AS, Hebert P, Tubaro PL. 2009. Probing evolutionary patterns in neotropical birds through DNA barcodes. PloS ONE 4,245-265.

Kohler J, Munn K, Ruegg A, Skusa A, Smith B. 2006. Quality control for terms and definitions in ontologies and taxonomies. BMC Bioinform 7, 212.

Latreille PA. 1803. Histoire naturelle générale et particulière des Crustacés et des insectes. 5, 406 pp.

Lopera Barrero NM, Povh, JA, Ribeiro RP, Gomes, PC, Jacometo, CB, Da Silva Lopes T. 2008. Comparison of DNA extraction protocols of fish fin and larvae samples: modified salt (NaCl) extraction. Cien. Inv. Agr. 35 (1), 65-74.

Macintosh     D, Overton JL, Thu HVT.  2002. Confirmation of two mud crab species (Genus Scylla) in the mangrove ecosystem of Mekong Delta, Vietnam. Journal of Shell fish Research. 21(1), 259-265.

Milne Edwards H. 1837 Histoire naturelle des Crustacés, comprenant l’anatomie, la physiologie et la classification deces animaux. Paris, Librairie de Roret. II: 1532

Milne Edwards H. 1837. Histoire naturelle des Crustacés, comprenant l’anatomie, la physiologie et la classifi cation de ces animaux. 2. Librarie de Roret, Paris: 532 p

Norman JR. 1937. Coast fishes, part II. The Patagonian region. Discovery Reports 16, 1–150.

Patwardhan B, Warude D, Pushpangadan P, Bhatt N. 2005. Ayurveda and traditional Chinese medicine: a comparative overview. Evidence-Based Complement and Alternat Medici. (4), 465–473.

Pfenninger M, Cordellier M, Streit B. 2006. Comparing the efficacy of morphologic and DNA-based taxonomy in the freshwater gastropod genus Radix (Basommatophora, Pulmonata). BMC Evolutionary Biology 6, 1-14.

Rapley R. 2000. The nucleic acid protocols handbook. ISBN 0-89603-459-3.

Rumphius GE. 1705. D’Ambonische Rariteitkamer, Behelzende eene Beschryvinge van allerhande zoo weeke als harde Schaalvisschen, te weeten raare Krabben, Kreeften, en diergelyke Zeedieren, als mede allerhande Hoorntjes en Schulpen, die men in d’Amboinsche Zee vindt: Daar beneven zommige Mineraalen, Gesteenten, en soorten van Aarde, die in d’Amboinsche, en zommige omleggende Eilanden gevonden worden. Verdeelt in drie Boeken, En met nodige Printverbeeldingen, alle naar’t leven getekent, voorzien. First Edition. Francois Halma, Amsterdam, 28+340+43 p., 60 pls.

Sakai K. 1999. Synopsis of the family Callianassidae, with keys to subfamilies, genera and species, and the description of new taxa (Crustacea: Decapoda: Thalassinidea). Zoologische Verhandelingen, 326, 1–152.

Sambrook J, Fritsch EF, Maniatis T. 1989. Molecular cloning. A laboratory manual, Vol 1. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, p 25-28.

Samouelle G. 1819. The Entomologist’s Useful Compendium; or an introduction to the knowledge of British Insects, comprising the best means of obtaining and preserving them, and a description of the apparatus generally used; together with the genera of Linné, and modern methods of arranging the Classes Crustacea, Myriapoda, spiders, mites and insects, from the affinities and structure, according to the views of Dr. Leach. Also an explanation of the terms used in entomology; a calendar of the times of appearance and usual situations of near 3,000 species of British Insects; with instructions for collecting and fitting up objects for the microscope. London : Thomas Boys 496 pp.

Saunders GW. 2005. Applying DNA barcoding to red macroalgae: a preliminary appraisal holds promise for future applications. Philosoph Transacti of the Royal Societ of London Seri Biological Sciences. 360, 1879–1888.

Smith MA, Wood DM, Janzen DH, Hallwachs W, Hebert P. 2007. DNA barcodes affirm that 16 species of apparently generalist tropical parasitoid flies (Diptera, Tachinidae) are not all generalists. Proceedi of the National Academy of Scien of the United States of America 104, 4967–4972.

Sogin ML, Morrison, HG, Huber JA, Welch DM, Huse SM. 2006. Microbial diversity in the deep sea and the underexplored ‘rare biosphere’. Proceedi of the National Academy of Scien USA, 103, 12115–12120.

Solari A, Garcia ML, Jaureguizar JA. 2010. First record of Eucinostomus melanopterus, Bleeker 1863 (Perciformes, Gerreidae) from the Río de la Plata Estuary. Journal of Appli Ichthyolo 26, 137–139.

Stephensen K. 1945. Brachyura of the Iranian Gulf. With an Appendix. male pleopoda of the Brachyura, in Danish Scientific Investigations in Iran. Part IV. E. Munksgaard Copenhagen, 57-257.

Stephensen K. 1946 . The Brachyura of the Iranian Gulf. Danish scientific investigations in Iran, part IV. Copenhagen: E. Munksgaard, 57-237.

Stephenson W, Campbell B. 1960. The Australian Portunids (Crustacea: ortunidae) IV. Remaining genera. Australian Journal of Marine and Freshwater Research 11, 73-122.

Stiasny G. 1921. Studien u¨ber Rhizostomeen. Capita Zoologica 1, 129–130.

Tan CGS, 1995. Dittosa, a new genus of leucosiid (Crustacea: Decapoda: Brachyura) from southern Australia and New Zealand. Proceedin of the Biologi Society of Washington, 108(3), 465-476.

Teletchea F. 2009. Molecular identification methods of fish species: reassessment and possible applications. Review in Fish Biolo and Fish, 19, 265-293.

Teletchea F. 2010. After 7 years and 1000 citations: Comparative assessment of the DNA barcoding and the DNA taxonomy proposals for taxonomists and non-taxonomists. Mitochond DNA, 21, 206–226.

Tephensen MB. 1946. Weches Eocene Ostracoda from Smithville, Texas: Jour. Paleontology, vol. 20, pp. 297-344, 42-45.

Tirmizi NM, Kazmi QB. 1988. Crustacea: Brachyura (Dromiacea, Archaeobrachyura, Oxystomata, Oxyrhyncha). Marine Fauna of Pakistan 4. BCCI Foundation Chair Publication 1. Institute of Marine Sciences, University of Karachi, Karachi, 244 p.

Titgen RH. 1982. The systematics and ecology of the decapods of Dubai, and teir zoogeographic relationships to the Arabian Gulf of the western Indian Ocean. PhD Thesis, Texas A & M University.

Victor BC, Hanner R, Shivji M, Hyde J, Caldow C. 2009 Identification of the larval and juvenile stages of the Cubera Snapper, Lutjanus cyanoptems , using DNA barcoding. Zootaxa. 2215, 24–36.

Ward RD, Zemlak TS, Innes BH, Last, PR, Hebert PDN. 2005. DNA barcoding Australia’s fish species. Philosoph Transacti of the Royal Soci B 360, 1847–1857.

Wasko  AP, Martins  C, Oliveira C, Foresti  F. 2003. Non-destructive genetic sampling in fish. An improved method for DNA extraction from fish fins and scales. Hereditas, 138, 161–165.

Wiens JJ. 2000. Phylogenetic Analysis of Morphological Data. Washington, DC, USA: Smithsonian Institution.

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