Investigation of heterosis using proteomic approach
Paper Details
Investigation of heterosis using proteomic approach
Abstract
Heterosis is a common phenomenon in which the F1 – hybrid of plants display superior agronomic performance compared to the inbred parental lines. For better understanding of the molecular mechanisms of plant heterosis, recently, different tissue of plant has been compared using proteomic approach between hybrid and their parental inbred lines. The patterns of plants proteome were analyzed by different software and proteins were identified by mass spectrometry/Edman sequencing method. Differential expressed proteins could be categorized in different functional classes and study of their dynamic regulation at different developmental stages could be responsible for heterosis in some plants.
Bao J, Lee SG, Chen C, Zhang X, Zhang Y, Liu S, Clark T, Wang J, Cao M, Yang H, Wang SM, Yu J. 2005. Serial analysis of gene expression study of a hybrid rice strain (LYP9) and its parental cultivars. Plant Physiolo 138, 1216–31.
Barber WT, Zhang W, Win H, Varala KK, Dorweiler JE, Hudson ME, Moose SP. 2012. Repeat associated small RNAs varyamong parents and following hybridization in maize. Proceedings of the National Academy of Sciences. U.S.A. 109, 10444e10449.
Birchler JA, Auger DL, Riddle NC. 2003. In search of the molecular basis of heterosis. Plant Cell 15, 2236–2239.
Canovas FM, Dumas-Gaudot E, Recorbet G, Jorrin J, Moch HP, Rossignol M. 2004. Plant proteome analysis. Proteomics 4, 285–298.
Chodavarapu RK, Feng S, Ding B, Simon SA, Lopez D, Jia Y, Wang GL, Meyers BC, Jacobsen SE, Pellegrini M. 2012. Transcriptomeand methylome interactions in rice hybrids. Proceedings of the National Academy of Sciences. U.S.A. 109, 12040e12045.
Darwin CR, ed .1876. The effects of cross- and self-fertilization in the vegetable kingdom (1st edn), John Murray.
Duvick DN. 1999. Heterosis: feeding people and protecting natural resources. In The Genetics and Exploitation of Heterosis in Crops (Coors, J.G. and Pandey, S., eds), pp. 19–29, American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America.
Fanseco S and Peterson FL. 1968. Hybrid vigor in seven parent diallelcross in common wheat (T.aestivum L.). Crop Science 8, 85 – 88.
Fields S and Song OK. 1989. A novel genetic system to detect protein-protein interactions. Nature 340, 245–246.
Fu H and Dooner HK. 2002. Intraspecific violation of genetic colinearity and its implications in maize. Proceeding of theNational Academy of Sciences. U.S.A. 99, 9573–8.
Fu Z, Jin X, Ding D, Li Y, Fu Z, Tang J. 2011. Proteomic analysis of heterosis during maize seed germination. Proteomics 11, 1462-147.
Guo M, Rupe M-A, Danilevskaya ON, Yang X, Hu Z. 2003. Genome-wide mRNA profiling reveals heterochronic allelic variation and a new imprinted gene in hybrid maize endosperm. The Plant Journal 36, 30–44.
Guo M, Rupe M-A, Zinselmeier C, Habben J, Bowen B-A, Smith O-S. 2004. Allelic variation of gene expression in maize hybrids. The Plant Cell 16, 1707–1716.
Guo M, Yang S, Rupe M, Hu B, Bickel DR, Arthur L, Smith O. 2008. Genome-wide allele-specific expression analysis using massively parallel signature sequencing (MPSStrade mark) reveals cis- and trans-effects on gene expression in maize hybrid meristem tissue. Plant Molecular Biology 66, 551–563.
Guo B, Chen Y, Zhang G, Xing J, Hu ZH, Feng W, Yao Y, Peng H, Du J, Zhang Y, Ni ZH, Sun Q. 2013. Comparative proteomic analysis of embryos between a maize hybrid and its parental lines during early stages of seed germination. Public Library of Sience. ONE 8, e65867.
Gygi SP, Rist B, Aebersold R. 2000. Measuring Gene Expression by Quantitative Proteome Analysis. Current Opinion in Biotechnology 11, 396-401.
Hallauer AR, Mıranda JB. 1981. Quantitative Genetics in Maize Breeding. Iowa State University.Press, Ames.
Hochholdinger F, Hoecker N. 2007. Towards the molecular basis of heterosis. Trends in Plant Science 12, 427e432.
Hoecker N, Keller B, Piepho H-P, Hochholdinger F. 2006. Manifestation of heterosis during early maize (Zea mays L.) root development. Theoritical and Applied Genetic 112, 421–429.
Hoecker N, Keller B, Muthreich N, Chollet D, Descombes P, Piepho HP, Hochholdinger F. 2008. Comparison of maize (Zea mays L.) F1-hybrid and parental inbred line primary root transcriptomes suggests organ-specific patterns of nonadditive gene expression and conserved expression trends. Genetics 179, 1275–1283.
Hoecker N, Lamkemeyer T, Sarholz B, Paschold A, Fladere C, Madlung J, wurster K, Stahl M, Piepho HP, Nordhiem A, Hochholdinger F. 2008. Analysis of nonadditive protein accumulation in young primary roots of maize (Zea mays L.) F1-hybrid compared to its parental inbred lines. Proteomics 8, 3882–3894.
Hua J, Xing Y, Wu W, Xu C, Sun X, YU S, Zhang Q. 2003. Single-locus heterotic effects and dominance by dominance interactions can adequately explain the genetic basis of heterosis in an elite rice hybrid. Proceedings of the National Academy of Sciences U.S.A. 100, 2574-2579.
Huang Y, Li L-H, Chen Y, Li X-H, Xu C-G, Wang S-P, Zhang Q-F. 2006. Comparative analysis of gene expression at early seedling stage between a rice hybrid and its parents using a cDNA microarray of 9198 uni-sequences. Science China Life Science 49, 519–529.
Khan MM, Komatsu S. 2004. Rice proteomics: recent developments and analysis of nuclear proteins. Phytochemistry 65(12), 1671-1681.
Lippman ZB, Zamir D. 2006. Heterosis: revisiting the magic. Trends Genetics 23, 80–86.
Lippman ZB and Zamir D. 2007. Heterosis: revisiting the magic. Trends Genet 23, 60–66.
Marcon C, Schützenmeister A, Schütz W, Madlung J, Piepho HP, Hochholdinger F. 2010. Nonadditive protein accumulation patterns in maize (Zeamays L.) hybrids during embryo development. Journal of Proteome Research 9, 6511–22.
Marcon C, Lamkemeyer T, Malik WA, Ungrue D, Piepho H-P, Hochholdinger F. 2013. Heterosis-associated proteome analyses of maize (Zea mays L.) seminal roots by quantitative label-free LC-MS. Journal of Proteomics 01392.
Muthreich N, Sch. utzenmeister A, Sch. utz W, Madlung J, Krug K, Nordheim A, Piepho HP, Hochholdinger F. 2010. Regulation of the maize (Zea mays L.) embryo proteome by RTCS which controls seminal root initiation. European Journal of Cell Biology 89, 242–249.
Shull GF, in: Gowen JW. 1952. (Eds.). Beginnings of the Heterosis Concept, Iowa State College Press, Ames, IA, pp. 14–48.
Song X, Ni Z, Yao Y, Xie C, Li Z, Wu H, Zhang Y, Sun Q. 2007. Wheat root proteome and differentially expressed root proteins between hybrid and parents. Proteomics 7, 3538–57.
Song X, Ni Z, Yao Y, Zhang Y, Sun Q. 2009. Identification of differentially expressed proteins between hybrid and parents in wheat (Triticum aestivumL.) seedling leaves. Theoritical and Applied Genetics 118, 213-225.
Song GS, Zhai HL, Peng YG, Zhang L, Wei G, Chen XY, Xiao YG, Wang L, Chen YJ, Wu B, Chen B, Zhang Y, Chen H, Feng XJ, Gong WK, Liu Y, Yin ZJ, Wang F, Liu GZ, Xu HL, Wei XL, Zhao XL, Ouwerkerkg PBF, Hankemeierh T, Reijmersh T, van der Heijdenh R, Lu CM, Wang M, van der Greef J, Zhu Z. 2010. Comparative transcriptional profiling and preliminary study on heterosis mechanism of super-hybrid rice. Molecular Plant 3, 1012e1025.
Stupar RM, Gardiner JM, Oldre AG, Haun WJ, Chandler VL, Springer NM. 2008. Gene expression analyses in maize inbreds and hybrids with varying levels of heterosis. BMC Plant Biology 8, 33.
Stupar RM and Springer NM. 2006. Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression patterns in the F1 hybrid. Genetics 173, 2199–2210.
Sun Q, Wu L, Ni Z, Meng F, Wang Z, Lin Z. 2004. Differential gene expression patterns in leaves between hybrids and their parental inbreds are correlated with heterosis in a wheat diallel cross. Plant Sciences 166, 651–7.
Thiemann A, Fu J, Schrag TA, Melchinger AE, Frisch M, Scholten S. 2010. Correlation between parental transcriptome and field data for the characterization of heterosis in Zea mays L. Theoritical and Applied Genetics 120, 401–13.
Wang J, Tian L, Lee HS, Wei NE, Jiang H, Watson B, Madlung A, Osborn TC, Doerge RW, Comia L, Chen ZJ. 2006. Genome wide nonadditive gene regulation in Arabidopsis allotetraploids. Genetics 172, 507–17.
Wang W, Meng B, Ge X, Song S, Yang Y, Yu X, Wang L, Hu S, Liu S, Yu J. 2008. Proteomic profiling of rice embryos from a hybrid rice cultivar and its parental lines. Proteomics 8, 4808-4821.
Wei G, Tao Y, Liu G, Chen C, Luo R, Xia H, Gan Q, Zeng H, Lu Z, Han Y, Li X, Song G, Zhai H, Peng Y, Li D, Xu H, Wei X, Cao M, Deng H, Xin Y, Fu X, Yuan L, Yu J, Zhu Z, Zhu L. 2009. A transcriptomic analysis of superhybrid rice LYP9 and its parents. Proceedind of the National Academy Sciences U.S.A. 106, 7695e7701.
Wilkins MR, Pasquali C, Appel RD, Ou K, Golaz O, Sanchez JC, Yan JX, Gooley AA, Hughes G, Humphery-Smith I, Williams KL, Hochstrasser DF. 1996. From proteins to proteomes: Large scale protein identification by two-dimensional electrophoresis and amino acid analysis. Biotechnology 14, 61-65.
Yao Y, Ni Z, Zhang Y, Chen Y, Ding Y, Han Z, Liu Z, Sun Q. 2005. Identification of differentially expressed genes in leaf and root between wheat hybrid and its parental inbreds using PCR based cDNA subtraction. Plant Molecular Biology 58, 367–84.
Zhang Y-H, Ni Z-F, Yao Y-Y, Zhao J, Sun Q-X. 2006. Analysis of genome- wide gene expression in root of wheat hybrid and its parentsinbreds using Barley1 GeneChip. Progress in National Science U.A.S. 16, 712–720.
Zhang HY, He H, Chen LB, Li L, Liang MZ, Wang XF, Liu XG, He GM, Chen RS, Ma LG, Deng XW. 2008. A genome-wide transcription analysis reveals a close correlation of promoter INDEL polymorphism and heterotic gene expression in rice hybrids. Molecular Plant 1, 720e731.
Zhang C, Yan Y, Zhang A, Lu Qingtao L, Wen X, Zhu Z, Zhang L, Lu C. 2012. Comparative proteomic study reveals dynamic proteome changes between superhybrid rice LYP9 and its parents at different developmental stages. Journal of Plant Physiology 169, 387-398.
Sanaz Adalatzadeh-Aghdam, Mahmoud Toorchi, 2014. Investigation of heterosis using proteomic approach. J. Biodiv. Environ. Sci., 5(1), 573-581.
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