A phylogenetic analysis of Hyoscyamus L. (Solanaceae) species from Iran based on ITS and trnL-F sequence data

Paper Details

Research Paper 01/07/2014
Views (225) Download (7)
current_issue_feature_image
publication_file

A phylogenetic analysis of Hyoscyamus L. (Solanaceae) species from Iran based on ITS and trnL-F sequence data

Shadi Hajrasouliha, Ali Asghar Massoumi, Taher Nejad Sattari, Seyed Mohammad Mahdi Hamdi, Iraj Mehregan
J. Bio. Env. Sci.5( 1), 647-654, July 2014.
Certificate: JBES 2014 [Generate Certificate]

Abstract

A phylogeny of Hyoscyamus L. (Solanaceae) that represents two different subgenera (i.e Hyoscyamus subgen. Dendrotrichon SchÖnbeck-Temesy and Hyoscyamus subgen. Hyoscyamus) based on ITS and trnL-F sequence data were studied. In this study five species of Hyoscyamus were Iran endemic. ITS and trnL-F sequence data for 18 species of this genus from Iran were studied. In addition we used 8 ITS sequence data and 13 trnL-F sequence data from genbank for another taxa in Solanaceae family. For phylogenetic analysis were used Bayesian and Maximum parsimony methods. Parsimony analyses of the ITS and trnL-F regions formed a dendrogram with strong bootstrap (ca.≥70%) that showed Hyoscyamus is a monophyletic group. In this study four synonymous species (H.insanus Stocks, H.rosularis SchÖnbeck-Temesy, H.orthocarpus SchÖnbeck-Temesy, H.nutans SchÖnbeck-Temesy) were stand in one clade and two similisar species H.bornmulleri Khatamsaz and H.tenuicaulis SchÖnbeck-Temesy constituted one clade. Also two species H.senecionis Willd and H.pusillus L. were formed one clade in trnL-F and combined analyses

VIEWS 6

APGII (Angiosperm phylogeny group) 2003. An update for the angiosperm phylogeny group classification for the orders and families of flowering plants: APGII Botanical Journal of the Linnean Society 141(4), 399-436. http://dx.doi.org/10.1046/j.1095-8339.2003.t01-1-00158.x

Baytop A. 1978. Flora of Turkey and the East Aegean Island 6, Edinburgh at the university press. http://dx.doi.org/10.3417/2008110

Bohs L, Olmstead RG. 2001. A reassessment of Normania and Triguera (Solanaceae) 228, 33-48. http://dx.doi.org/10.1007/s006060170035

D’Arcy WG. 1979. The classification of the Solanaceae P.p. 3-48 in: Hawkes JG, Lester RN, Skelding AD, (eds.), The Biology and Taxonomy of the Solanaceae. Academic press, London.

D’Arcy WG. 1991. The Solanaceae since 1976, with review of its biogeography. 75-139 in: Hawkes JG, Lester RN, Nee M, Strada RN, (eds.), Solanaceae III: Taxonomy,  Chemistry,  Evolution.  Royal  Botanical Garrdens, Kew.

Huelsenbeck John P, Crandall Keith A. 1997. Phylogeny  estimation  and hypothesis testing  using maximum likelihood, Annual Review of Ecology and Systematics 28, 437-466. http://dx.doi.org/10.1146/annurev.ecolsys.28.1.437

Hunziker AT. 1979. South American Solanaceae: a synoptic survey. P.p. 49-86 in Hawkes JG, Lester RN, Skelding AD, (eds.), The Biology and Taxonomy of the Solanaceae. Academic press London.

Hunziker AT. 2001.Genera Solanacearum.The genera of Solanaceae illustrated, arranged according to a New system Gantner, Ruggell (Liechtenstein). http://dx.doi.org/103417/2009019

Khatamsaz M. 1377. Flora of Iran, Solanaceae family research institute of forests and rangelands Vol 24. http://dx.doi.org/10.12692/ijb/4.6.6-18

Kouhsari SHM, Sharifi G, Ebrahimzadeh H, Khatamsaz M. 2006. comprative study of six isoenzyme systems in some species of Hyoscyamus L. from Iran, Pakistan journal of Botany 38, 107-119.

Mabberley DI. 1987. The plant book Cambridge University press, cambridge, New York. http://dx.doi.org/10.1126/science.1166605

Maddison DR, Maddison WP. 2000. Macclade4: Analysis of phylogeny and character Evolution-Sinauer Associates. http://dx.doi.org/10.1600/036364407780360210

Maddison WP, Maddison DR. 2010. Mesquite (version2.75): A modular system for evolutionary analysis. http://dx.doi.org/10.1098/rspb.2010.2220.6

Nasir  YJ.  1985.  Flora  of  Pakistan,  Solanaseae Department of botany, university of krachi, krachi 168.

Olmstead RG, Bohs L, Abdel-Migid H, Santiago-Valentin E, Garcia VF, Collier SM. 2008.  A  molecular  phylogeny  of  the  Solanaceae, Taxon: 1159-1181 http://dx.doi.org/10.11646/phytotaxa.116.2.1

Olmstead RG, Palmer JD. 1992. A chloroplast DNA phylogeny of the Solanaceae: subfamilial relationships and character evolution. Ann Missouri Botanical Garden 79, 346-360. http://dx.doi.org/10.2307/2666726

Pojarkovae AI. 1955. in schischkin BK, Bobrov EG (eds), Flora SSSR, Tom XXII Akademiya Nauk SSSR publishers, Moscow-Leningrad.

Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution, Bioinformatics, 14(9), 817-818. http://dx.doi.org/10.1093/bioinformatics/14.9.817

Ronquist F, Huelsenbeck  JP. 2003. MrBayes 3. Bayesian phylogenetic inference under mixed models, Bioinformatics 19(12), 1572-1574. http://dx.doi.org/10.1093/bioinformatics/btg180

SchÖnbeck-Temesy E. 1972. Solanaceae In Rechinger KH (ed), Flora Iranica, Vol100, akademische druck and verlagsanstalt Granz 1, 12-72.

Swofford DL. 2002. PAUP*: Phylogenetic analysis using parsimony (*and other methods), version 40b10. Sunderland, Sinauer Associates. http://dx.doi.org/10.1115/2009/897364

Taberlet Pierre, Gielly Ludovic, Pautou Guy, Bouvet Jean. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17, 1105-1109. http://dx.doi.org/10.1007/BF00037152

Tamura K, Peterson D, Peterson N, Stecher G, Nei  M,  Kumar  S.  2011.   MEGA  5,  Molecular genetics   analysis   using   Maximum   likelihood, Evolutionary distance. http://dx.doi.org/10.1093/molbev/msr121

Tu T, Volis S, Dillon MO, Sun H, Wen J. 2010. Dispersals   of   Hyoscyameae   and   Mandragoreae (solanaceae) from the New world to Eurasia in the early miocene and their biogeographic diversification within   Eurasia,   Molecular   Phylogenetics   and Evolution 57(3), 1225-1237. http://dx.doi.org/10.1016/j.ympev.2010.09.007

Willis JC. 1973. A dictionary of the flowering plants and ferns VII ed, University press, Cambridge.