Characterization and identification of wheat (Triticum aestivum L.) rhizospheric bacteria by using 16s rRNA gene sequencing

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Research Paper 01/12/2016
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Characterization and identification of wheat (Triticum aestivum L.) rhizospheric bacteria by using 16s rRNA gene sequencing

Rizwan Ali Sheirdil, Rifat Hayat, Xiao-Xia Zhang, Nadeem Akhtar Abbasi, Safdar Ali, Muhammad Azeem
J. Bio. Env. Sci.9( 6), 31-38, December 2016.
Certificate: JBES 2016 [Generate Certificate]

Abstract

Bacterial strains were isolated from wheat rhizospheric soil with the aim to explore potential strains for the biofertilizer technology suitable to the local climate and conditions. All the isolates were characterized for their plant growth promoting (PGP) activities such as IAA production, P-solublization, nifH gene presence, catalase and oxidase production. The promising and potential strains based on their PGP activities were tested in two experiments of wheat. In the first growth chamber experiment, ten strains were inoculated with the seeds and sown in small pots filled with the soil. All the strains showed positive results in yield attributes of the plant like shoot length, root length, fresh and dry weight. Further, six strains which performed best in the growth chamber experiment were tested in a pot experiment under controlled conditions and the results showed that each strain significantly increased like shoot length (7.6-25%), root length (19.7-34.1%), number of tillers (33.3-100%), fresh weight (17.8-31.3%), dry weight (19.3-48.6%), spike length (4.3-28.2%) and grain yield (7.6-41.5%) of wheat plants over control. The strains used in the pot experiment were identified by standard procedure of 16s rRNA gene sequencing which showed that two of strains were from genus Bacillus, two from Pseudomonas, one from Acinetobacter and one from Jeotgalicoccus.

VIEWS 17

Abbaspoor A, Zabihi HR, Movafegh S, Akbari MH. 2009. The efficiency of Plant Growth Promoting Rhizobacteria (PGPR) on yield and yield components of two varieties of wheat in salinity condition. American-Eurasian Journal of Sustainable Agriculture 3, 824-828.

Afzal A, Ashraf M, Asad SA, Farooq M. 2005. Effect of phosphate solubilizing microorganisms on phosphorus uptake, yield and yield traits of wheat (Triticum aestivum L.) in rainfed area. International Journal of Agriculture & Biology 7, 207-209.

Afzal A, Bano A. 2008. Rhizobium and phosphate solubilizing bacteria improve the yield and phosphorus uptake in wheat (Triticum aestivum). International Journal of Agriculture & Biology 10, 85-88.

Agamy R, Mohamed G, Rady M. 2012. Influence of the application of fertilizer type on growth, yield, anatomical structure and some chemical components of wheat (Triticum aestivum L.) grown in newly reclaimed soil. Australian Journal of Basic and Applied Sciences 6, 561-570.

Assuero SG, Tognetti JA. 2010. Tillering regulation by endogenous and environmental factors and its agricultural management. The American Journal of Plant Science and Biotechnology 4, 35-48.

Biswas JC, Ladha JK, Dazzo FB. 2000. Rhizobial inoculation improves nutritional uptake and growth of lowland rice. Soil Science Society of America Journal 64, 1644-1650.

Bric JM, Bostock RM Silverstone SE. 1991. Rapid in situ assay for indoleacetic acid production by bacteria immobilized on a nitrocellulose membrane. Applied and Environmental Microbiology 57, 535-538.

Canbolat MY, Bilen S, Çakmakçı R, Şahin S, Aydın A. 2006. Effect of plant growth-promoting bacteria and soil compaction on barley seedling growth, nutrient uptake, soil properties and rhizosphere microflora. Biology and Fertility of soils 42, 350-357.

Chen Y, Mei R, Liu L, Kloepper J. 1996. The use of yield increasing bacteria (YIB) as plant growth-promoting rhizobacteria in Chinese agriculture. Management of soil borne diseases. Ludhiana: Kalyani Publishers 6, 165-184.

Egamberdieva D. 2010.Growth response of wheat cultivars to bacterial inoculation in calcareous soil. Plant, Soil and Environment2, 56-58.

Egamberdiyeva D. 2007. The effect of plant growth promoting bacteria on growth and nutrient uptake of maize in two different soils. Applied Soil Ecology 36, 184-189.

Gaur A. 1990. Phosphate solubilizing micro-organisms as biofertilizer: Omega Scientific Publishers.

Hayat R, Ali S, Amara U, Khalid R, Ahmed I. 2010. Soil beneficial bacteria and their role in plant growth promotion: a review. Annals of microbiology 60, 579-598.

Kang SMO, Khan AL, Hamayun M, Shinwari ZK, Kim YHA, Joo G, Lee INJ. 2012. Acinetobacter calcoaceticus ameliorated plant growth and influenced gibberellins and functional biochemicals. Pakistan Journal of Botany 44, 365-372.

Khalid A, Arshad M, Zahir Z. 2004. Screening plant growth‐promoting rhizobacteria for improving growth and yield of wheat. Journal of Applied Microbiology 96, 473-480.

Kloepper J, Schroth M, Miller T. 1980. Effects of rhizosphere colonization by plant growth-promoting rhizobacteria on potato plant development and yield. Phytopathology 70, 1078-1082.

Kloepper JW, Zablotowicz RM, Tipping EM, Lifshitz R. 1991. Plant growth promotion mediated by bacterial rhizosphere colonizers. The rhizosphere and plant growth 21, 315-326.

Kohler J, Caravaca F, Carrasco L, Roldán A. 2006. Contribution of Pseudomonas mendocina and Glomus intraradices to aggregate stabilization and promotion of biological fertility in rhizosphere soil of lettuce plants under field conditions. Soil use & management 22, 298-304.

Mia MAB, Shamsuddin, Z, Wahab Z, Marziah M. 2010. Effect of plant growth promoting rhizobacterial (PGPR) inoculation on growth and nitrogen incorporation of tissue-cultured Musa plantlets under nitrogen-free hydroponics condition. Australian Journal of Crop Science 4, 85-90.

Narula N, Deubel A, Gans W, Behl R, Merbach W. 2006. Paranodules and colonization of wheat roots by phytohormone producing bacteria in soil. Plant Soil and Environment 52, 119-121.

Ozturk A, Caglar O, Sahin F. 2003. Yield response of wheat and barley to inoculation of plant growth promoting rhizobacteria at various levels of nitrogen fertilization. J. of Plant Nutrition & Soil Science 166, 262-266.

Pikovskaya R. 1948. Mobilization of phosphorus in soil in connection with vital activity of some microbial species. Mikrobiologiya 17, 362-370.

Rodríguez H, Fraga R. 1999. Phosphate solubilizing bacteria and their role in plant growth promotion. Biotechnology advances 17, 319-339.

Rolfe BG, Dazzo FB, Biswas JC, Ladha JK, Yann YG. 2000. Rhizobial inoculation influences seedling vigor and yield of rice. Agronomy Journal 92, 880-886.

Saber Z, Pirdashti H, Esmaeili M, Abbasian A, Heidarzadeh A. 2012. Response of Wheat Growth Parameters to Coinoculation of Plant Growth Promoting Rhizobacteria (PGPR) and Different Levels of Inorganic Nitrogen and Phosphorus. World Applied Sciences Journal 16, 213-219.

Sadaghiani MHR, Barin M, Jalili F. 2008. The Effect of PGPR inoculation on the growth of wheat. International Meeting on Soil Fertility Land Management and Agroclimatology. Turkey,  891-898

Steel RGD, Torrie JH, Dickey DA. 1980. Principles and procedures of statistics: a biometrical approach. Mc Graw-Hill, Inc 113, 137-154. 

Turan M, Gulluce M, Cakmakci R, Oztas T Sahin F. 2010. The effect of PGPR strain on wheat yield and quality parameters. 19th World Congress of Soil Science, Soil Solutions for a Changing World: 1-6 August 2010, Brisbane, Australia.

Upadhyay SK, Singh JS, Saxena AK, Singh DP. 2011. Impact of PGPR inoculation on growth and antioxidant status of wheat under saline conditions. Plant Biology 12, 256-258.

Van Loon L. 2007. Plant responses to plant growth-promoting rhizobacteria. European Journal of Plant Pathology 119, 243-254.

Vessey JK. 2003. Plant growth promoting rhizobacteria as biofertilizers. Plant & soil 255, 571-586.

Watanabe F, Olsen S. 1965. Test of an Ascorbic Acid Method for Determining Phosphorus in Water and NaHCO3 Extracts from Soil 1. Soil Science 29, 677-678.

Wu S, Jia S, Sun D, Chen M, Chen X, Zhong J, Huan L. 2005. Purification and characterization of two novel antimicrobial peptides Subpeptin JM4-A and Subpeptin JM4-B produced by Bacillus subtilis JM4. Current microbiology 51, 292-296.

Zhang J, Liu J, Meng L, Ma Z, Tang X, Cao Y, Sun L. 2012. Isolation and characterization of plant growth-promoting rhizobacteria from wheat roots by wheat germ agglutinin labeled with fluorescein isothiocyanate. The Journal of Microbiology 50, 191-198.