Evaluation of seed storage proteins in common bean by some biplot analysis
Paper Details
Evaluation of seed storage proteins in common bean by some biplot analysis
Abstract
In order to study of seed storage proteins, proteins samples of common bean genotypes were prepared by 0.2 M NaCl of extracting soluble. Genotypes were located in two groups by cluster analysis using Wilks’ lambda statistic. Two groups were different for yield components (number of pods per plant, number of seeds per plant and seed weight). Factor analysis showed that two factors described 61% of total proteins variation. Correlated bands with yield components characters had the highest coefficients for the first factor. This factor was named “yield components proteins”. Protein bands via RM 58 and 64 had relationship with days to flowering. Therefore, the second factor was named “phenologic proteins”. Genotypes were located in four groups by these factors. Length, angle and presence of protein bands were important characteristics to explain graphical information in GGE biplot compared to factor analysis.
Aharizad S, Sabzi M, Mohammad SA, Khodadadi E. 2012. Multivariate analysis of genetic diversity in wheat (Triticum aestivum L.) recombinant inbred lines using agronomic traits. Annals of Biological Research 3, 2118-2126.
Barelli MAA, Celeste M, Vidigal Filho PS, Scapim CA. 2000. Combining ability among six common bean cultivars adapted to the North West Region of Paraná State, Brazil. Bragantia 59, 159-164 http://dx.doi.org/10.1590/S0006-87052000000200006
Bhatt GM. 1970. Multivariate analysis approach to selection of parents for hybridization aiming at yield component in self pollination crops. Australian Journal of Agricultural Research 21, 1-7.
Corte AD, Moda-Cirino V, Arias CAA, Toledo JFF, Destro D. 2010. Genetic analysis of seed morphological traits and its correlations with Grain yield in common bean. Brazillian Archives of Biology and Technology 53, 27-34. http://dx.doi.org/10.1590/S1516-89132010000100004
Durán L, Blair M, Giraldo M, Machiavelli R, Prophete E, Nin J, Beaver J. 2005. Morphological and molecular characterization of common bean (Phaseolus vulgaris L.) landraces from the Caribbean. Crop Science 45, 1320-1328.
Eivazi R, Naghavi MR, Hajheidari M, Pirseyedi SM, Ghaffari MR, Mohammadi SA, Majidi I, Salekdeh GH, Mardi M. 2008. Assessing wheat (Triticum aestivum L.) genetic diversity using quality traits, amplified fragment length polymorphisms, simple sequence repeats and proteome analysis. Annals of Applied Biology 152, 81–91. http://dx.doi.org/10.1111/j.1744-7348.2007.00201.x
FAO. 2003. Production Yearbook. Vol. 56. Rome. Gardiner SE, Forbe MB. 1992. Identification of cultivars of grasses and forage legumes by SDS-PAGE of seed protein. In Seed analysis. (H. F. Linskens and J. F. Jackson, ed.), Springer-Verlag, Berlin, New York, 43–61
Garvin DF, Weeden NF. 1994. Isozyme evidence supporting a single geographic origin for domesticated tepary bean. Crop science 34, 1390-1395.
Gepts P. 1990 a. Biochemical evidence bearing on the domestication of Phaseolus (Fabaceae) beans. Economic Botany 44, 28-38.
Gepts P. 1990 b. Genetic diversity of seed storage proteins in plants. In Plant populations genetics, breeding and genetic resources. (A. H. D. Brown, M.T. Clegg, A. L. Khaler and B. S. Weir, ed.), Sinauer Associates Inc., Sunderland, Massachusetts, 64–82.
Gepts P, Osborn TC, Rashka K, Bliss FA. 1986. Phaseolin-protein variability in wild form and landraces of the common bean (Phaseolus vulgaris); evidence for multiple centres of domestication. Economic Botany 40, 451–468.
Gonçalves-Vidigal MC, Silvero L, Elias HT, Filho PSV. 2008. Combining ability and heterosis in common bean cultivars. Pesquisa agropecuaria brasileira 43, 1143-1150.
Hames B, Richwood D. 1990. Gel electrophoresis of proteins: a practical approach. Oxford University Press, USA.
Joshi BK, Mudwari A, Bhatta MR, Ferrara GO. 2004. Genetic diversity in Nepalese wheat cultivars based on agromorphological traits and coefficients of parentage. Nepal Agriculture Research Journal 5, 7-17.
Krochko JE, Bewley DJ. 2000. Seed storage proteins in cultivars and subspecies of alfalfa (Medicago sativa L.). Seed Science Research 10, 423-434. http://dx.doi.org/10.1017/S0960258500000477
Laemmli UK. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. nature 227, 680-685.
Marzooghian A, Valizadeh M, Moghaddam M, Kooshki MH. 2011. The comparison of genetic diversity between two extraction methods of seed storage proteins in common bean. Clinical Biochemistry 44, 256-256. http://dx.doi.org/10.1016/j.clinbiochem.2011.08.640
McClean P, Kami J, Gepts P. 2004. Genomics and genetic diversity in common bean. Legume Crop Genomics. AOCS Press, Champaign, 60–82.
Mitranov L. 1983. A study of general and specific combining ability for productivity in kidney bean (Phaseolus vulgaris L.) cultivars. Genetics and Plant Breeding (Sofia) 16, 176-180.
Mohammadi SA, Prasanna BM. 2003. Analysis of Genetic Diversity in Crop Plants—Salient Statistical Tools and considerations. Crop Science 43, 1235-1248.
Nienhuis J, Singh S. 1988. Genetics of Seed Yield and its Components in Common Bean (Phaseolus vulgaris L.) of Middle‐American Origin. Plant breeding 101, 155-163. http://dx.doi.org/10.1111/j.1439-0523.1988.tb00281.x
Ocompo CH, Toro CO. 2004. Biochemical evidence supporting the existence of a weedy form in tepary bean (Phaseolus acutifolius A. Gray). Bean Improvement Cooperative. Annual report 47, 165-166.
Ocompo CH, Toro CO. 2008. Phaseolin diversity of Nicaraguan common bean germplasm held at CIAT). Bean Improvement Cooperative. Annual report 51, 122-123.
Sheidai M, Hamta A, Jaffari A, Noori-Daloli MR. 2000. Morphometric and seed protein studies of Trifolium species and cultivars in Iran. Plant Genetic Resources Newsletter 120, 52–54.
Walton PD. 1971. The use of factor analysis in determining characters for yield selection in wheat. Euphytica 21, 416-421. http://dx.doi.org/10.1007/BF00035667.
Yan W. 2001. GGEBiplot—A Windows application for graphical analysis of multi-environment trial data and other types of two-way data. Agronomy Journal 93, 1111–1118. http://dx.doi.org/10.2134/agronj2001.9351111x
Akbar Marzooghian, Mostafa Valizadeh, Mohammad Moghaddam, Mohammad Hasan Kooshki, 2013. Evaluation of seed storage proteins in common bean by some biplot analysis. Int. J. Biosci., 3(5), 101-107.
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