Field validation of heat tolerance and early morning flowering QTLs (qHTSF4.1 and qEMF3) and combination of the two QTLs introduced into IR64 (Oryza sativa L.) background at CSU Piat, Philippines

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Research Paper 17/06/2023
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Field validation of heat tolerance and early morning flowering QTLs (qHTSF4.1 and qEMF3) and combination of the two QTLs introduced into IR64 (Oryza sativa L.) background at CSU Piat, Philippines

Maurine B. Abao, Neil Nemesio A. Baliuag, Roselyn B. Layugan, Michelle S. Gregorio, Stephanie T. Cabauatan
Int. J. Biosci.22( 6), 252-264, June 2023.
Certificate: IJB 2023 [Generate Certificate]

Abstract

Heat stress reduces rice yield by 10% for every degree Celsius increase beyond optimum temperature. Field testing of IR64-derived near-isogenic lines with heat tolerance and early morning flowering QTLs was conducted at CSU Piat during hottest months of 2016-2017. To evaluate how well IR64 NILs tolerated heat, morpho-agronomic data were collected and analyzed when they were subjected to high temperature at field conditions. Flower opening time (FOT), the peak flowering time (PFT), and the time when all of the flowers are closed (FCT) were also determined for early morning flowering traits (EMF). Results showed that morpho-agronomic features of IR64-derived NILs such panicle length, number of tillers per hill, spikelet fertility, spikelet/panicle, plant height, days to 50% flowering and maturity were similar when compared to its recurrent parent. Moreover, EMF traits results revealed that IR64HT+EMF and IR64EMF NILs exhibited the earliest FOT, PFT, and CFT. This research under high temperature field condition clearly validated the heat tolerance performance of IR64-derived NILs had similar morpho-agronomic traits compared to its recurrent parent indicating recovery of recurrent parent genome. Furthermore, IR64HT+EMF and IR64EMF NILs exhibited the earliest FOT, PFT, and CFT indicating that the presence of qEMF3 and its combination with qHTSF4.1 strongly confers EMF traits as an escape mechanism from heat stress. The researchers recommend the use of genetic materials with combined genes of heat tolerance (qHTSF4.1) and early morning flowering (qEMF3) for these are useful germplasm for future and expected global warming.

VIEWS 31

Amasiddha B, Ramya KT, Prashant Kumar P, Neha R, Leena T, Harikrishna Ramya P, Jain N, Singh PK, Singh GP, Prabhu KV. 2016. Evaluation of marker assisted backcross breeding derived lines for morpho-physiological characters under late sown heat stress condition in bread wheat. Indian Journal of Genetics 76(3), 304-311.

Bahuguna RN, Jagadish KSV, Coast O, Wassmann R. 2014. Plant abiotic stress: temperature extremes. In: Neal Van Alfen (editor-in-chief). Encyclopedia of Agriculture and Food Systems 4, San Diego: Elsevier 330-334.

Baliuag NNA, Redona ED, Hernandez JE, Sta Cruz PC, Ye C. 2015. Genetic Analysis for Heat Tolerance and Early Morning Flowering Traits at Flowering Stage in Rice (Oryza sativa L.). Philippine Journal of Crop Science (PJCS) 40(3), pp. 62-72.

Das S, Krishnan P, Nayak M, Ramakrishnan B. 2014. High temperature stress effects on pollens of rice (Oryza sativa L.) genotypes. Environmental and Experimental Botany 101, 36-40.

De Datta SK. 1981. Principles and practices of rice production. John Wiley & Sons, Inc. 618 pp.

GRiSP (Global Rice Science Partnership). 2013. Rice almanac, 4th edition. Los Baños (Philippines): International Rice Research Institute. 283 p.

Hasegawa T, Ishimaru T, Kondo M, Kuwagata T, Yoshimoto M, Fukuoka M. 2011. Spikelet sterility of rice observed in the record hot summer of 2007 and the factors associated with its variation. J. Agric. Meteorol 67(4), 225-232, 2011.

Hirabayashi H, Sasaki K, Kambe T, Gannaban RB, Miras MA, Mendioro MS, Simon EV, Lumanglas PD, Fujita D, Takemoto-Kuno Y, Takeuchi Y, Kaji R, Kondo Kobayashi N, Ogawa T, Ando I, Jagadish KSV, Ishimaru T. 2014. qEMF3, a novel QTL for the early-morning flowering trait from wild rice, Oryza officinalis, to mitigate heat stress damage at flowering in rice, O. sativa. Journal of Experimental Botany DOI: 10.1093/jxb/eru474 published December 22, 2014.

Ingram KT, Manalo PA, Namuco OS, Pamplona RR, Weerakoon WM. 1995. Interactive effects of elevated carbon dioxide and temperature on rice growth and development. In: Peng, S. et al (editors.).Climate Change and Rice. Springer-Verlag Berlin Heidelberg. pp 278-287.

IPCC (Intergovernmental Panel on Climate Change). 2014. Climate Change 2014 Synthesis Report (Headline Statements from The Summary for Policymakers). 5 November 2014. Accessed 26 January 2014.

Ishimaru T, Hirabayashi H, Ida M, Takai T, San-Oh YA, Yoshinaga S, Ando I, Ogawa T, Kondo M. 2010. A genetic resource for early-morning flowering trait of wild rice Oryzao fficinalis to mitigate high temperature-induced spikelet sterility at anthesis. Annals of Botany 106, 515-520.

Jagadish SVK, Cairns J, Lafitte R, Wheeler TR, Price AH, Craufurd PQ. 2010a. Genetic analysis of heat tolerance at anthesis in rice. Crop Science 50, 1633-1641.

Jagadish SVK, Craufurd PQ, Wheeler TR. 2007. High temperature stress and spikelet fertility in rice (Oryza sativa L.). Journal of Experimental Botany 58(7), 1627-1635.

Jagadish SVK, Muthurajan R, Oane R, Wheeler T, Heuer S, Bennett J, Craufurd PQ. 2010b. Physiological and proteomic approaches to address heat tolerance during anthesis in rice. Journal of Experimental Botany 61, 143-156.

Jagadish SVK, Muthurajan R, Rang ZW, Malo R, Heuer S, Bennett J, Craufurd PQ. 2011. Spikelet proteomic response to combined water deficit and heat stress in rice (Oryza sativa cv. N22). Rice 4, 1-11.

Jagadish SVK, Septiningsih EM, Kohli A, Thomson MJ, Ye C, Redoña E, Kumar A, Gregorio GB, Wassmann R, Ismail AM, Singh RK. 2012. Genetic advances in adapting rice to a rapidly changing climate. J. Agro Crop Sci (2012) ISSN 0931-2250.

Jagadish SVK, Sumfleth K, Howell G, Redoña E, Wassmann R, Heuer S. 2010c. Temperature effects on rice: Significance and possible adaptation. Environment: coping with adverse conditions and creating opportunities. In: Wassman, R. (editor). Advanced technologies of rice production for coping with climate change: ‘no regret’ options for adaptation and mitigation and their potential uptake. Proceedings of the Workshop Advanced Technologies of Rice Production for Coping with Climate Change: ‘No Regret’ Options for Adaptation and Mitigation and their Potential Uptake.23-25 June 2010 in Los Baños, Philippines. IRRI Limited Proceedings No. 16. Los Baños (Philippines): International Rice Research Institute pp. 19-25.

Jagadish SVK, Ye C, Ishimaru T, Bahuguna NR, Redoña E. 2010. Physiological and genetic advances to unravel heat stress responses in rice. 7th International Rice Genetics Symposium, Manila, Philippines.

Kobayasi K, Masui H, Atsuta Y, Matsui T, Yoshimoto M, Hasegawa T. 2009. MARCO Symposium 2009. http: www.niaes.affrc.go.jp /marco/marco2009/english/index.html, W2-12.

Kobayasi K, Matsui T, Yoshimoto M, Hasegawa T. 2010. Effects of temperature, solar radiation, and vapor-pressure deficit on flower opening time in rice. Plant Prod. Sci 13(1), 21-28.

Krishnan P, Ramakrishnan B, Raja Reddy K, Reddy VR. 2011. High-temperature effects on rice growth, yield, and grain quality. In: Donald L. Sparks (editor), Advances in Agronomy Vol. III, Burlington: Academic Press 87-206.

Madan P, Jagadish SVK, Craufurd PQ, Fitzgerald M, Lafarge T, Wheeler TR. 2012. Effect of elevated CO2 and high temperature on seed-set and grain quality of rice. Journal of Experimental Botany 63(10), 3843–3852.

Matsui T, Omasa K. 2002. Rice cultivars tolerant to high temperature: anther characteristics. Annals of Botany 89, 683-687.

Moya TB, Ziska LH, Namuco OS, Olszyk D. 1998. Growth dynamics and genotypic variation in tropical, field-grown paddy rice (Oryza sativa L.) in response to increasing carbon dioxide and temperature. Global Change Biology 4, 645-656.

PAGASA. 2011. Climate change in the Philippines. Department of Science and Technology. 85pp.

Paupiere MJ, van Heusden AW, Bovy AG. 2014. The Metabolic Basis of Pollen Thermo-Tolerance: Perspectives for Breeding. Metabolites 4, 889-920.

Peng S, Huang J, Sheehy JE, Laza RC, Visperas RM, Zhong X, Centeno GS, Khush GS, Cassmankg. 2004. Rice yields decline with higher night temperature from global warming. PNAS 101(27), 9971-9975.

Prasad VPP, Boote K, Allen L, Sheehy J, Thomas J. 2006. Species, ecotype and cultivar differences in spikelet fertility and harvest index of rice in response to high temperature stress. Field Crops Research 95, 398-411.

Rang ZW, Jagadish SVK, Zhou QM, Craufurd PQ, Heuer S. 2011. Effect of high temperature and water stress on pollen germination and spikelet fertility in rice. Environmental and Experimental Botany 70, 58-65.

Redoña E, Manigbas NL, Laza MA, Sierra SN, Bartolome VI, Nora LA, Barroga WV, Noriel AJM. 2009. Identifying heat tolerant rice genotypes under different environments. SABRAO J Breeding and Genetics 41, (special suppl): published in CD (ISSN: 1029-7073).

Sanchez PL, Wing RA, Brar DS. 2013. The wild relative of rice: genomes and genomics. In: Q. Zhang and R. A. Wing (editors). Genetics and Genomics of Rice, Plant Genetics and Genomics: Crops and Models 5, DOI: 10.1007/978-1-4614-7903-1_2.

Satake T, Yoshida S. 1978. High temperature induced sterility in Indica rice at flowering. Jpn. J. Crop Sci 47, 6-17.

Shah F, Huang J, Cui K, Nie L, Shah T, Chen C, Wang K. 2011. Impact of high-temperature stress on rice plant and its traits related to tolerance. Journal of Agricultural Science 1-12. Cambridge University Press.

Sheehy JE, Mabilangan AE, Dionora MJA, Pablico PP. 2007.Time of day of flowering in wild species of the genus Oryza. International Rice Research Notes (IRRN) 32(1), 12-13.

Tazib T, Kobayashi Y, Koyama H, Matsui T. 2016. QTL analyses for anther length and dehiscence at flowering as traits for the tolerance of extreme temperature in rice (Oryza sativa L.). Euphytica 203, 629-642.

Tenorio FA, Ye C, Redoña E, Sierra S, Laza M, Argayoso MA. 2013. Screening rice genetic resources for heat tolerance. SABRAO Journal of Breeding and Genetics 45(3), 371-381.

Thanh PH, Phan PDT, Ishikawa R, Ishii T. 2010. QTL analysis for flowering time using backcross population between Oryza sativa Nipponbare and O. rufipogon. Genes Genet. Syst 85, p. 273-279.

Thomson MJ. 2014. High-Throughput SNP genotyping to accelerate crop improvement. Plant Breed. Biotech 2(3), 195-212.

Tian X, Matsui T, Li S, Yoshimoto M, Kobayasi K, Hasegawa T. 2010. Heat-induced floret sterility of hybrid rice (Oryza sativa L.) cultivars under humid and low wind conditions in the field of Jianghan Basin, China. Plant Prod. Sci 13(3), 243-251.

Wahid A, Gelani S, Ashraf M, Foolad MR. 2007. Heat tolerance in plants: an overview. Environ. Exp. Bot 61, 199-233.

Wassman R, Jagadish SVK, Heuer S, Ismail A, Redoña E, Serraj R, Singh RK, Howell G, Pathak H, Sumfleth K. 2009a. Climate change affecting rice production: the physiological and agronomic basis for possible adaptation strategies. In Advances in Agronomy 101, Sparks, D.L. (Editor). Burlington: Academic Press. pp. 19-122.

Wassman R, Jagadish SVK, Peng SB, Sumfleth K, Hosen Y, Sander BO. 2010. Rice production and global climate change: scope for adaptation and mitigation activities. In: Wassman, R. (editor). Advanced technologies of rice production for coping with climate change: ‘no regret’ options for adaptation and mitigation and their potential uptake. Proceedings of the Workshop Advanced Technologies of Rice Production for Coping with Climate Change: ‘No Regret’ Options for Adaptation and Mitigation and their Potential Uptake.23-25 June 2010 in Los Baños, Philippines. IRRI Limited Proceedings No. 16. Los Baños (Philippines): International Rice Research Institute. pp 67-76.

Wassmann R, Jagadish SVK, Sumfleth K, Pathak H, Howell G, Ismail A, Serraj R, Redona E, Singh RK, Heuer S. 2009b. Regional vulnerability of climate change impacts on Asian rice production and scope for adaptation. In Advances in Agronomy Vol. 102, Sparks, D.L. (editor). Burlington: Academic Press pp. 91-133.

Xiao Y, Pan Y, Luo L, Zhang G, Deng H, Dai L, Liu X, Tang W, Chen L, Wang G. 2011. Quantitative trait loci associated with seed set under high temperature stress at the flowering stage in rice (Oryzasativa L.). Euphytica 178, 331-338.

Xu Y, Crouch JH. 2008. Marker-assisted selection in plant breeding: from publications to practice.Crop Sci 48, 391-407.

Xu Y. 2010. Molecular plant breeding. CAB International. 755 pp.

Ye C, Argayoso MA, Redoña E, Sierra S, Laza M, Dilla C, Mo YJ, Thomson MJ, Chin JH, DelaViña CB, Diaz GQ, Hernandez J. 2012. Mapping QTL for heat tolerance at flowering stage in rice using SNP markers. Plant Breeding 131, 33-41.

Ye C, Tenorio FA, Argayoso MA, Laza M, Koh H, Redoña ED, Jagadish KSV, Gregorio GB. 2016a. Identifying and confirming quantitative trait loci associated with heat tolerance at flowering stage in different rice populations. BMC Genetics 16, 41.

Ye C, Tenorio FA, Redoña ED, Morales-Cortezano PS, Cabrega GA, Jagadish KSV, Gregorio GB. 2016b. Fine-mapping and validating qHTSF4.1 to increase spikelet fertility under heat stress at flowering in rice. TheorAppl Genet. DOI: 10.1007/s00122-015-2526-9, Springer-Verlag Berlin Heidelberg 2016.

Yoshida S, Satake T, Mackill DS. 1981. High temperature stress in rice. IRRI Research Paper Series No. 67 October 15 pp.