Genome wide association studies (GWAS) analysis of karnal bunt resistance in Wheat (Triticum aestivum L.) germplasm collection from Pakistan
Appels R, Eversole K, Feuillet C, Stein N, Feuillet K, Keller B. 2018. Shifting the limits in wheat research and breeding using a fully annotated reference genome. Journal of Science 361, eaar7191.
Aujla SS, Gill KS, Sharma YR, Singh D, Nanda GS. 1981. Effect of date of sowing and level of nitrogen on the incidence of Karnal bunt disease of wheat in the Punjab. Indian Journal of Ecology 4, 71-74.
Brar SG, Davilla FG, He X, Sansaloni PC, Singh PR, Singh PK. 2018. Genetic mapping of resistance in hexaploid wheat for a quarantine disease: Karnal bunt. Frontiers in Plant Sciences 9, 1-14.
Chao S, Dubcovsky J, Dvorak J, Luo MC, Baenziger PS, Matnyazov R, Clark RD, Talbert LE, Anderson JA, Dreisigacker S, Glover K, Chen J, Campbell K, Bruckner PL, Rudd JC, Haley S, Craver FB, Perry S, Sorrells EM, Akhunov ED. 2010. Population and genome specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.). Journal of BMC Genetics 11, 1-17.
Chao S, Zhang W, Dubcovsky J, Sorrells M. 2007. Evaluation of genetic diversity and genome wide linkage disequilibrium among U.S. wheat (Triticum aestivum L.) germplasm representing different market classes. Journal of Crop Science 47, 1018-1030.
Dhaliwal HS, Singh DV. 1989. Up-to-date life cycle of Neovossia indica (Mitra) Mundkur. Journal of Current Science 57, 675-677.
Emebiri L, Singh KP, Tan MK, Fuentes-Dávila G, He X, Singh RP. 2019. Reaction of Australian durum, common wheat and triticale varieties to Karnal bunt (Tilletia indica) infection under artificial inoculation inthe field. Journal of Crop Pasture and Science 70, 107-112.
Endelman JB. 2011. Ridge regression and other kernels for genomic selection with R package rrBLUP. Journal of Plant Genome 4, 250-255.
Fuentes-Davila G, Rajaram S. 1994. Sources of resistance to Tilletia indica in wheat. Journal of Crop Protection 13, 20-24.
Gill KS, Sharma I, Aujla SS. 1993. Karnal bunt and wheat production. Punjab agricultural university, Ludhiana, India pp. 1-153.
Gupta V, He X, Kumar N, Fuentes-Davila G, Sharma KR, Dreisigacker S, Juliana P, Ataei N, Singh PK. 2019. Genome wide association study of karnal bunt resistance in a wheat germplasm collection from Afghanistan. International Journal of Molecular Sciences 20, 1-15.
Illumina. 2017. Introduction to Genome Studio software. Illumina, San Diego, CA.
Kaur M, Singh R, Kumar S, Mandhan RP, Sharma I. 2016. Identification of QTL conferring Karnal bunt resistance in bread wheat. Indian Journal of Biotechnology 15, 34-38.
Kumar S, Veena C, Neelam RY, Sharma I, Pawan KY, Kumar S, Behl RK. 2015. Identification and validation of SSR markers for Karnal bunt (Neovossia indica) resistance in wheat (Triticum aestivum). Indian Journal of Agricultural Science 85(5), 108-113.
Lopes SM, El-Basyoni I, Baenziger SP, Singh S, Royo C, Ozbek K, Aktas H, Ozer E, Odemir F, Manickavelu A, Ban T, Vikram P. 2015. Exploiting genetic diversity from landraces in wheat breeding for adaptation to climate change. Journal of Experimental Botany 66(12), 3477-3488.
Mehdi V, Joshi LM, Abrol YP. 1973. Studies on chapati making quality: (vi) effect of wheat grains with bunts on the quality of chapaties. Bull Grain Technol 11, 195-197.
Mehmood A, Idrees M, Burhan M, Muhammad F, Niaz ZM. 2014. Evaluation of wheat test lines/commercial varieties against Karnal bunt under field conditions. Pakistan Journal of Phytopathology 26(1), 137-141.
Murray MG, Brennan PJ 1998. The risk to Australia from Tilletia indica, the cause of Karnal bunt of wheat. Journal of Australian Plant Pathology 1998 (27), 212-225.
Na-Allah MS, Muhammad A, Mohammed IU, Bubuche ST, Yusif H, Tanimu MU. 2018.Yield of Wheat (Triticum aestivum L.) as Influenced by Planting Date and Planting Methods in the Sudan Savanna Ecological Zone of Nigeria. International Journal of Life Science Scientific Research 4(5), 1993-2002.
Osman M, He X, Singh RP, Duveiller E, Lillemo M, Pereyra SA, Westerdijk-Hoks I, Kurushima M, Yau SK, Benedettelli S. 2015. Phenotypic and genotypic characterization of CIMMYT’s 15th International Fusarium Head Blight screening nursery of wheat. Journal of Euphytica 205, 521-537.
Pandey V, Manoj S, Dinesha P, Anil K. 2018. Integrated proteomics, genomics, metabolomics approaches reveal oxalic acid as pathogenicity factor in Tilletia indica inciting Karnal bunt disease of wheat. Journal of Scientific Reports 8, 7826.
R Core Team. 2013. R: A language and environment for statistical computing. R Found. Stat. Comp., Vienna.
Royer HM, Rytter JL. 1988. Comparison of host ranges of Tilletia indica and T. barclayana. Journal of Plant Disease 72(2), 133-136.
Rush MC, Stein MJ, Bowden LR, Riemenschneider R, Boratynski T, Royer HM. 2005. Status of Karnal bunt of wheat in the United States 1996-2004. Journal of Plant Disease 89(3), 212-223.
Sajjad M, Saeed A, Muhammad AH, Hafiz GZM, Muhammad N, Muhammad F, Manzoor H. 2018. Incidence of Karnal bunt (Tilletia indica Mitra) of wheat in southern Punjab, Pakistan. International Journal of Bioscience 12(2), 280-285.
Sehgal SK, Kaur G, Sharma I, Bains NS. 2008. Development and molecular marker analysis of Karnal bunt resistant near isogenic lines in bread wheat variety PBW 343. Indian Journal of Genetics and Plant Breeding 68 (1), 21-5.
Sharma I, Bains NS, Nanda SG. 2004. Inheritance of Karnal bunt-free trait in bread wheat. Journal of Plant Breed 123, 96-97.
Sharma I, Bains NS, Singh K, Nanda SG. 2009. Additive genes at nine loci govern karnal bunt resistance in a set of common wheat cultivars. Journal of Euphytica 142(3), 301-307.
Sharma I, Bains NS, Singh K, Nanda GS. 2005. Additive genes at nine loci govern Karnal bunt resistance in a set of common wheat cultivars. Journal of Euphytica 142, 301–307.
Sharma P, Shefali P, Bharati MKK, Senthil K, Satish S, Mahender S, Sudheer K, Garima S, Sharma I, Gyanendra PS. 2018. Development and validation of microsatellite markers for Karnal bunt (Tilletia indica) and loose smut (Ustilago segetum tritici) of wheat from related fungal species. Journal of Phytopathology 166, 729-738.
Singh N, Behl RK, Punia SM, Singh V. 2002. In vitro screening and production of Karnal bunt resistant doubled haploids in wheat. Journal of Wheat Information Service 94, 5-8.
Singh SL. 1985. Cultural practices and the Karnal bunt (Neovossia indica) incidence. Journal of Indian Phytopathology 38, 594.
Singh S, Brown-Guedira G, Grewal T, Dhaliwal H, Nelson J, Singh H, Gill B. 2003. Mapping of a resistance gene effective against Karnal bunt pathogen of wheat. Journal of Theoretical and Applied Genetics 106, 287-292.
Singh S, Guerdia-Brown L, Grewal ST, Dhaliwal SH, Nelson CJ, Singh H, Gill BS. 2003. Mapping of a resistant gene effective against karnal bunt pathogen of wheat. Journal of Theoretical and Applied Genetics 106, 287-292.
Singh S, Sharma I, Sehgal SK, Bains NS, Guo Z, Nelson CJ, Bowden RL. 2007. Molecular mapping of QTLs for Karnal bunt resistance in two recombinant inbred populations of bread wheat. Journal of Theoretical and Applied Genetics 116, 147-154.
Sun C, Zhang F, Yan X, Zhang X, Dong Z, Cui D, Chen F. 2017. Genome wide association study for 13 agronomic traits reveals distribution of superior alleles in bread wheat from the yellow and Huai valley of China. Journal of Plant Biotechnology 15(2017), 953-969.
Villareal RL, Fuentes-Davila G, Kazi MA, Rajaram S. 1995. Inheritance of resistance to Tilletia indica (Mitra) in Synthetic Hexaploid Wheat x Triticum aestivum crosses. Journal of Plant Breeding 114, 547-548.
Wang SX, Zhu LY, Zhang X, Shao H, Liu P, Hu BJ, Zhang H, Zhang PH, Chang C, Lu J, Xia CX, Sun LG. 2017. Genome wide association study for grain yield and related traits in elite whet vareities and advanced lines using SNP markers. Journal of PlosOne 12(11), 1-14.
Wang S, Wong D, Forrest K, Allen A, Chao S, Huang EB. 2014. Characterization of polyploid wheat genomic diversity using a high-density 90,000 single nucleotide polymorphism array. Journal of Plant Biotechnology 12, 787-796.
Wright D, Murray G, Tan KM. 2003. ‘National diagnostic protocol for the identification of Tilletia indica, the cause of Karnal bunt. (Department of Agriculture, Western Australia).
You Q, Yang X, Peng Z, Xu L, Wang J. 2018. Development and applications of a high throughput genotyping tool for polyploid crops: single nucleotide polymorphism (SNP) array. Journal of Frontiers in Plant Science 9, 1-15.
Zhang D, Ersoz E, Lai QC, Todhunter JR, Tiwari KH Gore AM, 2010. Mixed linear model approach adapted for genome-wide association studies. Journal of Nature Genetics 42, 355-360.
Zia MH, Haque MI, Rauf CA, Akhtar LH, Munir M. 2012. Comparative virulence in isolates of Tilletia indica and host resistance against karnal bunt of wheat. Journal of Animal and Plant Sciences 22(2), 467-472.