GGE biplot analysis of wheat-rye disomic addition lines

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Research Paper 01/05/2014
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GGE biplot analysis of wheat-rye disomic addition lines

Zahra Bahadori, Ezatollah Farshadfar
J. Bio. Env. Sci.4( 5), 77-84, May 2014.
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Abstract

Chromosome addition lines have often been used to map the genes on donor chromosomes based on the presence/absence of the genes on the chromosomes added to the recipient genome. In this study a set of wheat-rye disomic addition lines (DALs) was used to locate QTLs controlling yield and stability on specific chromosome(s) in rye. Experiments were conducted using a randomized complete block design with three replications under three rainfed and irrigated conditions. The GGE [genotype plus genotype x environment (GE)] biplot methodology was used to analyze the grain yield data attempting to locate the chromosome(s) which probability involved in controlling genetic stability performance in rye. The results of combined ANOVA showed that the environment, genotype and GE interaction effects were found to be significant, indicating remarkable changes in ranking of genetic materials over the environments. According to GGE biplot analysis, two parents (Chinese spring vs. Imperial rye) were different in their adaptations and consequently yield and stability performance. The results also verified that it would be possible to determine contrasting DALs based on the stability and integrating yield with stability performance for improving wheat genetic materials. Ranking of the DALs based on the ideal genotype (high yield and stability performance) revealed that most of the genes involved in controlling high yield and stability performance are located on two chromosomes 7R and 5R in rye. It was also concluded that GGE biplot method can be used as efficient tool for identifying superior genetic materials in a multi-environment trials data.

VIEWS 3

Ananiev EV, Riera-Lizarazu O, RINES HW, PHILLIPS RL. 1997. Chromosome-specific molecular organization of maize (Zea mays L.) centromeric regions. Proc Natl Acad Sci USA 94, 3524-3529.

Aniol A. 2004. Chromosomal location of aluminum tolerance genes in rye. Plant Breeding 123, 132–136.

Bass HW, Riera-Lizarazu O, Ananiev EV, Bordoli SJ, Rines HW, Phillips RL, Sedat JW, Agard DA, Cande WZ. 2000. Evidence the coincident initiation of homolog pairing and synapsis during telomere-clustering (bouquet) stage of meiotic prophase. Journal of Cell Science 113, 1033-1042.

Becker HC, Leon J. 1988. Stability analysis in plant breeding. Plant Breeding. 101, 1–23.

Bhan MK, Pal S, Rao BL, Dhar AK, Kang MS. 2005. GGE biplot analysis of oil yield in lemongrass. Journal of New Seeds 7, 127–139.

Driscoll C, Sears ER. 1971. Individual addition of the chromosomes of ‘Imperial’ rye to wheat. Agronomy Abstract p. 6.

Eberhart SA, Russell WA. 1966. Stability parameters for comparing varieties. Crop Science 6, 36-40.

Fan XM, Kang MS, Chen H, Zhang Y, Tan J, Xu C. 2007. Yield stability of maize hybrids evaluated in multi-environment trials in Yunnan, China Agronomy Journal 99, 220-228.

Farshadfar E, Zali H, Reza Mohammadi R. 2011. Evaluation of phenotypic stability in chickpea genotypes using GGE-Biplot. Annals of Biological Research 2 (6), 282-292.

Finlay KW, Wilkinson GN. 1963. The analysis of adaptation in a plant breeding programme. Australian Journal of Agricultural Research 14, 742-754.

Gauch HG. 1992. Statistical analysis of regional yield trials: AMMI analysis of factorial designs. Elsevier, Amsterdam, Netherlans.

Islam AKMR, Shepherd KW. 1990. Incorporation of barley chromosomes in wheat, pp. l28-151 in Biotechnology in Agriculture and Forestry, Vol. 13 Wheat edited by Y.P.S. B AJAJ. Springer-Verlag, Berlin.

Gallego FJ, L َpez-Solanilla E, Figueiras AM, Benito  C.  1998.  Chromosomal  location  of  PCR fragments as a source of DNA markers linked to aluminium tolerance genes in rye. Theoretacal Appllied Genetic 96, 426–434.

Jianzhong L, Yujing L, Yiping T, Jianwei G, Bin L, Jiyun L, Zhensheng L. 2001. Chromosomal location of genes conferring the tolerance to Pi starvation stress and acid phosphatase (APase) secretion in the genome of rye (Secale L.). Plant and Soil 237, 267–274.

Jin W, Melo JR, Nagaki K, Talbert PB, Henikoff S, Dawe RK, Jiang J. 2004. Maize centromeres: Organization and functional adaptation in the genetic background of oat. Plant Cell 16, 571-581.

Kang MS. 1993. Simultaneous selection for yield and stability in crop performance trials: Consequences for growers. Agronomy Journal 85, 754–757.

Li ZS. 1985. Wheat Wild Hybridization. Science Press, Beijing, China.

Li ZS, Hao S. 1990. Wheat chromosome engineering in China. Proceedings of the 2nd International Symposium of Plant Chromosome Engineering. pp 1–6.

Lin CS, Binns MR. 1988. A method for analyzing cultivar x location x year experiments: a new stability parameter. Theoretical Appllied Genetic 76, 425–430.

Muehlbauer GJ, Riera-Lizarazu O, Kynast RG, Martin D, Phillips RL, Rines HW. 2000. A maize-chromosome 3 addition line of oat exhibits expression of the maize homeobox gene liguleless3 and alterations of cell fate. Genome 43, 1055-1064.

Szakacs E, Molnar-Lang M. 2010. Molecular cytogenetic evaluation of chromosome instability in Triticum aestivumSecale cereale disomic addition lines. Journal of Appllied Geneicst 51(2), 49–152.

Taylor C, Shepherd KW, Langridge P. 1998. A molecular genetic map of the long arm of chromosome 6R of rye incorporating the cereal cyst nematode resis tance gene, CreR. Theoretical Appllied Genetic 97, 1000–1012.

Wricke G. 1962. Über eine Methode zur Erfassung der ökologischen Streubreite in Feldversuchen. Z. Pflanzenzüchtg 47, 92–96.

Yan W. 2001. GGEbiplot: A Windows application for graphical analysis of multienvironment trial data and other types of two-way data. Agronomy Journal 93, 1111–1118.

Yan W. 2002. Singular value partitioning in biplot analysis of multienvironment trial data. Agronomy Journal 94, 990-996.

Yan W, Kang MS. 2003. GGE Biplot Analysis: A Graphical Tool for Breeders, Geneticists and Agronomists. 1st Edn., CRC Press LLC., Boca Roton, Florida, pp: 271

Yan W, Hunt LA, Sheng Q, Szlavnics Z. 2000. Cultivar evaluation and megaenvironment investigation based on the GGE biplot. Crop Science 40, 597-605.

Yan W, Rajcan IR. 2002. Biplot analysis of test sites and trait relations of soybean in Ontario. Canadian Journal of Plant Science 42, 11–20.

Yan W, Tinker NA. 2006. Biplot analysis of multi-environment trial data: Principles and applications. Canadian Journal of Plant Science 86, 623-645.