Y-chromosome polymorphisms in two Pakistani ethnic groups and its relationship with neighbouring Indian populations

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Research Paper 01/08/2016
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Y-chromosome polymorphisms in two Pakistani ethnic groups and its relationship with neighbouring Indian populations

Muhammad Tariq, Habib Ahmad, Inamullah, Umar Farooq, Tauseef Ahmad
Int. J. Biosci. 9(2), 159-163, August 2016.
Copyright Statement: Copyright 2016; The Author(s).
License: CC BY-NC 4.0

Abstract

The paternally inherited Y-chromosome short tandem repeats (Y-STRs), are excellent tool in inferring modern human evolutionary studies, genetic human identification and genetic genealogy. In the present study a total of 60unrelated male of two ethnic groups (Gujarsand Karlars) from Khyber Pakhtunkhwa province of Pakistan were analyzed using PowerPlex®12 Y-STR loci amplification system (DYS19, DYS385a/b, DYS389I/II, DYS390, DYS391, DYS392, DYS393, DYS437, DYS438 andDYS439), to investigate the genetic polymorphisms and to determine the genetic relationship of two Pakistani populations with three neighboring Indian populations of the same linguistic family. In Gujars a total of 21 haplotypes were identified, 15 of which were unique and 6 haplotype were shared among two or more individuals. The haplotype diversity among Gujars was 0.9701 ± 0.0171, while in Karlars population 19 haplotypes were identified among which 13 were unique haplotypes and 6 were shared among two or more individuals and the observed haplotype diversity value was 0.9563 ± 0.0213.RSTpairwise analysis suggest close genetic relationship between three Indian populations (Andh, Naikpod, Pardhan), while genetically distinct from the two Pakistani Populations (Gujars and Karlars). Results also demonstrate that the 12 Y-STR loci analyzed were highly polymorphic in Gujars and Karlars populations and hence useful for forensic cases and population’s genetic studies.

Allchin B, Allchin R. 1982. The Rise of Civilization in India and Pakistan. Cambridge University Press.

Barger B, Niederstatter H, Erhart D, Gassner C, Gassner H, Schennach H, Parson W. 2012. Tracking the iceman’s scent by high resolution mapping of y haplogroup G in Tyrol (Austria). DNA in Forensics. 8th international Forensic Y-User Workshop.

Casanova M, Leroy P, Boucekkine C, Weissenbach J, Bishop C, Fellous M, Purrello M, Fiori G, Siniscalco M. 1985. A human Y-linked DNA polymorphism and its potential for estimating genetic and evolutionary distance. Science 230, 1403-1406.

Excoffier L, Lischer HEL. 2010. Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources 10, 564-567.

Grimes BF. 1992. “Ethnologue: Languages of the World,” 12th ed., Summer Institute of Linguistics, Inc., Dallas, Texas, USA.

Hussain JA. 1997. History of the peoples of Pakistan towards independence. Oxford University press, Karachi, Pakistan.

Ibbetson D. 1883. Punjab Caste. Sang-e-Meel publications, Lahore 9-16.

Karafet TM, Mendez FL, Meilerman MB, Underhill PA, Zegura SL, Hammer MF. 2008. New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree. Genome Research 185, 830-838.

Kim S, Kim K, Han M, Kim W. 2012. Forensic genetic analysis for the AmpF1STR Yfiler system in the Korean Population. DNA in Forensics 8th International Forensic Y-User Workshop.

Lucotte G, Ngo NY. 1985. p49f, A highly polymorphic probe, that detects Taq1 RFLPs on the human Y chromosome. Nucleic Acids Research 13(22), 8285.

Mellars P. 2006. Going east: new genetic and archaeological perspectives on the modern human colonization of Eurasia. Science 313(5788), 796-800.

Qamar R, Ayub Q, Mohyuddin A, Helgason A, Mazhar K, Mansoor A, Zerjal T, Tyler-Smith C, Mehdi SQ. 2002. Y-chromosomal DNA variation in Pakistan. The American Journal of Human Genetics 70(5), 1107-1124.

Thanseem I, Thangaraj K, Chaubey G, Singh VK, Bhaskar LV, Reddy BM, Reddy AG, Singh L. 2006. Genetic affinities among the lower castes and tribal groups of India: inference from Y chromosome and mitochondrial DNA. BMC genetics 7(1), 1.

Wolpert S. 2000. A new history of India. Oxford University Press, New York.

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