Markers assisted selection for multiple Stripe rust resistance genes in spring bread wheat lines

Paper Details

Research Paper 01/03/2016
Views (304) Download (7)
current_issue_feature_image
publication_file

Markers assisted selection for multiple Stripe rust resistance genes in spring bread wheat lines

Naseeb Ullah, Niaz Ali, Muhammad Iqbal, Aziz-ud-Din, Azhar Hussain Shah, Inayat Ur Rahman, Habib Ahmad, Inamullah, Ghulam Muhammad Ali
Int. J. Biosci.8( 3), 63-74, March 2016.
Certificate: IJB 2016 [Generate Certificate]

Abstract

Stripe rust (yellow rust) of wheat, caused by Puccinia striiformis f. sp. tritici (Pst), is one of the most important yield limiting diseases of wheat. Although, the pathogen has overcome resistance offered by more than 90 genes and QTLs still, aggregation of resistant genes in future wheat genotypes is the most practical and efficient means of tackling the rapidly evolving virulent races of Pst. In order to stack combination of effective stripe rust resistance genes in future wheat genotypes, 99 spring wheat lines derived from the cross of Khyber-87 × Suleman-96 were screened with five closely linked PCR-based markers with stripe rust resistance genes Yr5, Yr10, Yr17 and Yr9. Out of 99 experimental lines, S19M93 and S23M41 markers revealed the presence of Yr5 gene in 86 and 70 genotypes, respectively. While, Xpsp3000 suggested presence of Yr10 gene in 66 genotypes, excluding two heterozygous lines PBS-07-60 and PBS-07-64. VENTRIUP-LN2 marker revealed that all genotypes were negative for Yr17 gene, while iag95 marker revealed presence of rye origin Yr9 gene in all genotypes. The presence of 1RS fragments may be related to the poor bread making quality in certain wheat backgrounds. Furthermore, coexistence of both Xpsp3000 and iag95 markers are indicative of the potential interstitial recombination between wheat 1BS and rye 1RS chromatin or the presence of 1RS fragments on more desirable wheat chromosomes 1A or 1D. The present work will facilitate gene pyramiding approaches against stripe rust and may be useful in future wheat improvement programs.

VIEWS 12

Akbari M, Wenzl P, Caig V, Carling J, Xia L, Yang S, Uszynski G, Mohler V, Lehmensiek A, Kuchel H, Hayden MJ, Howes N, Sharp P, Vaughan P, Rathmell B, Huttner E, Kilian A. 2006. Diversity arrays technology (DArT) for high-throughput profiling of the hexaploid wheat genome. Theoretical and Applied Genetics 113, 1409–1420. http://dx.doi.org/10.1007/s00122-006-0365-4

Ali N, Schwarzacher T, Ahmad H, Grayboch R, Heslop-Harrison JS. 2016. Introgression of chromosome segments from multiple alien species in wheat breeding lines with wheat streak mosaic virus resistance. Heredity (In press).

Anugrahwati DR, Shepherd KW, Verlin DC, Zhang P, Mirzaghaderi G, Walker E, Francki MG, Dundas IS. 2008. Isolation of wheat-rye 1RS recombinants that break  the  linkage  between  the stem rust resistance gene SrR and secalin. Genome 51, 341-349. http://dx.doi.org/10.1139/G08-019.

Bariana HS, Maih H, Brown GN, Willey N, Lehmensiek A. 2007. Molecular mapping of durable rust resistance in wheat and its implication in breeding. In: wheat production in stressed environment. Eds: H.T Buck et al.,  Springer Netherlands 723-727. http://dx.doi.org/10.1007/1-4020-5497-1_88

Bariana HS. 2003. Breeding for disease resistance. In: Thomas B, Murphy DJ, Murray BG (eds) Encyclopedia of applied plant sciences. Academic Press, Harcourt, 244–253.

Bryan GJ, Collins AJ, Stephenson P, Orry A, Smith JB, Gale MD. 1997. Isolation and Characterisation of microsatellites from hexaploid bread wheat. Theoretical and Applied Genetics 94, 557-563. http://dx.doi.org/10.1007/s001220050451

Chen XM, Penman L, Wan AM, Cheng P. 2010. Virulence races of Puccinia striiformis f. sp. tritici in 2006 and 2007 and development of wheat stripe rust and distributions, dynamics, and evolutionary relationships of races from 2000 to 2007 in the United States. Canadian Journal of Plant Pathology, 32, 315-333. http://dx.doi.org/10.1080/07060661.2010.499271

Chen XM. 2005. Epidemiology and control of stripe rust (Puccinia striiformis f. sp. Tritici) on wheat. Canadian Journal of Plant Pathology 27(3), 314-337. http://dx.doi.org/10.1080/07060660509507230

Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin, Botanical Society of America 99, 968-973.

Dubcovsky J, Dvorak J. 2007. Genome plasticity a key factor in the success of polyploid wheat under domestication. Science 316(5833), 1862-1866. http://dx.doi.org/10.1126/science.1143986

Foulkes MJ, Slafer GA, Davies WJ, Berry P, M, Sylvester-Bradly R, Martre P, Calderini DF, Griffith S, Reynolds MP. 2011. Raising yield potential of wheat. Optimizing lodging resistance. Journal of experimental Botany 62, 469-486. http://dx.doi.org/10.1093/jxb/erq300

Helguera M, Khan IA, Kolmer J, Lijavetzky, D, Zhong-Qi L, Dubcovsky J. 2003. PCR assays for the Lr37-Yr17-Sr38 cluster of rust resistance genes and their use to develop isogenic hard red spring wheat lines. Crop Science 43(5), 1839-1847. http://dx.doi.org/10.2135/cropsci2003.1839

Jaccoud D, Peng K, Feinstein D, Kilian A. 2001. Diversity arrays: a solid state technology for sequence information independent genotyping. Nucleic Acids Research 29, e25. http://dx.doi.org/10.1093/nar/29.4.e25

Landjeva S, Korzun V, Tsanev V, Vladova R, Ganeva G. 2006. Distribution of the wheat–rye translocation 1RS. 1BL among bread wheat varieties of Bulgaria. Plant Breeding 125, 102-104. http://dx.doi.org/10.1111/j.1439-0523.2006.01142.x

Luo PG, Zhang HY, Shu K, Zhang HQ, Luo HY, Ren ZL. 2008. Stripe rust (Puccinia striiformis f. sp. tritici) resistance in wheat with the wheat-rye 1BL/1RS chromosomal translocation. Canadian Journal of Plant Pathology 30(2), 254-259. http://dx.doi.org/10.1080/07060661.2008.10540540

Mago R, Spielmeyer W, Lawrence G, Lagudah E, Ellis J, Pryor A. 2002. Identification and mapping of molecular markers linked to rust resistance genes located on chromosome 1RS of rye using wheat-rye translocation lines. Theoretical and Applied Genetics 104,1317-1324. http://dx.doi.org/10.1007/s00122-002-0879-3

Matsuoka Y. 2011. Evolution of polyploid triticum wheats under cultivation: The role of domestication, natural hybridization and allopolyploid speciation in their diversification. Plant and Cell Physiology 52, 750-764. http://dx.doi.org/10.1093/pcp/pcr018

McIntosh RA, Yamazaki YY, Dubcovsky J, Rogers WJ, Morris C, Somers DJ, Appels R, Devos KM. 2013. MacGene 2012: catalogue of gene symbols for wheat.

Mujeeb-Kazi A, Gul A, Farooq M, Rizwan S, Ahmad I. 2008. Rebirth of synthetic hexaploids with global implications for wheat improvement. Australian Journal of Agricultural Research 59, 391-398. http://dx.doi.org/10.1071/AR07226

Mujeeb-Kazi A, Hettel GP. 1995. Utilizing wild grass biodiversity in wheat improvement: 15 years of wide cross research at CIMMYT. CIMMYT Report 2, 1-140. http://hdl.handle.net/10883/1204

Mujeeb-Kazi A, Roldan S, Suh DY, Ter-Kuile N, Farooq S. 1989. Production and cytogenetics of Triticum aestivum L. hybrids with some rhizomatous Agropyron species. Theoretical and Applied Genetics 77, 162-168. http://dx.doi.org/10.1007/BF00266181

Mujeeb-Kazi A, Delgado R, Cortes A, Cano S, Rosas V, Sanchez J. 2004. Progress in exploiting Aegilops tauschii for wheat improvement. Annual Wheat Newsletter 50, 79-88.

Murphy LR, Santra D, Kidwell K, Yan G, Chen X, Campbell KG. 2009. Linkage maps of wheat stripe rust resistance genes Yr5 and Yr15 for use in Marker-Assisted Selection. Crop Science  49, 1786-1790. http://dx.doi.org/10.2135/cropsci2008.10.0621

Pakistan  Economic  Survey.  2014-15.  Pakistan Bureau of Statistics. Government of Pakistan, Ministry of Finance, Pakistan.

Peng J, Sun D, Nevo E. 2011. Wild emmer wheat, Triticum dicoccoides, occupies a pivotal position in wheat domestication process. Australian Journal of Crop Science 5(9), 1127-1143.

Poland JA, Brown PJ, Sorrells ME, Jannink JL. 2012. Development of high-density genetic maps for barley and wheat using a novel two enzyme genotyping by sequencing approach. PLoS One 7, e32253. http://dx.doi.org/10.1371/journal.pone.0032253

Randhawa MS, Bariana HS, Mago R, Bansal UK. 2015. Mapping of a new stripe rust resistance locus Yr57 on chromosome 3BS of wheat. Molecular Breeding 35(2), 1-8. http://dx.doi.org/10.1007/s11032-015-0270-0

Randhawa M, Bansal U, Valárik M, Klocová B, Doležel J, Bariana H. 2014. Molecular mapping of stripe rust resistance gene Yr51 in chromosome 4AL of  wheat. Theoretical  and  applied  Genetics 127(2), 317-324. http://dx.doi.org/10.1007/s00122-013-2220-8

Rapilly F. 1979. Yellow rust epidemiology. Annual Review of Phytopathology 17, 59-73. http://dx.doi.org/10.1146/annurev.py.17.090179.000 423

Reddy L, Friesen TL, Meinhardt SW, Chao S, Faris JD. 2008. Genomic analysis of the Snn1 locus on wheat chromosome arm 1BS and the identification of candidate genes. Plant Genome 1, 55–66. http://dx.doi.org/10.3835/plantgenome2008.03.018 1

Rosewarne GM, Herrera-Foessel SA, Singh RP, Huerta-Espino J, Lan CX, He ZH. 2013. Quantitative trait loci of stripe rust resistance in wheat. Theoretical and applied Genetics 126(10), 2427-2449. http://dx.doi.org/10.1007/s00122-013-2159-9

Rubio P, Daza L, Jouve N. 1999. Meiotic behaviour, chromosome stability and genetic analysis of the preferential transmission of 1B-1R, 1A-1R and 1R (1D) chromosomes in inter varietal hybrids of wheat. Agronomie 19, 57-68. http://dx.doi.org/10.1023/A:1017534203520

Schwarzacher T, Ali N, Chaudhary H, Graybosch R, Kapalande H, Kinski E, Heslop-Harrison JS. 2011. Fluorescent in situ hybridizationas a genetic technology to analyzing chromosomal organization of alien wheat recombinant lines. Physical Mapping Technologies for the Identification and Characterization of Mutated Genes to Crop Quality 90, 121-128. http://dx.doi.org/10.1.1.225.9676

Schwarzacher T, Anamthawat-Jonsson K, Harrison G, Islam A, Jia J, King I, Leitch A, Miller T, Reader S, Rogers W. 1992. Genomic in situ hybridization to identify alien chromosomes and chromosome segments in wheat. Theoretical and applied Genetics 84,778-786. http://dx.doi.org/10.1007/BF00227384

Sharma S, Bhat PR, Ehdaie B, Close TJ, Lukaszewski AJ, Waines JG. 2009. Integrated genetic map and genetic analysis of a region associated with root traits on the short arm of rye chromosome 1 in bread wheat. Theoretical and Applied Genetics 119, 783-793. http://dx.doi.org/10.1007/s00122-009-1088-0

Singh RP, Huerta-Espino J, Rajaram S. 2000. Achieving near immunity to leaf and stripe rusts in wheat by combining slow rusting resistance genes. Acta Phytopathologica et Entomologica Hungarica 35, 133-139.

Smith PH, Hadifield J, Hart NJ, Koebner RMD, Boyd LA. 2007. STS markers for the wheat yellow rust resistance gene Yr5 suggest a NBS-LRR-type resistance gene cluster. Genome 50(3), 259-265. http://dx.doi.org/10.1139/G07-004

Statistics Division, Statistical Yearbook. 2014-2015. Food and Agricultural Organization, United Nations. United Nations, Rome (http://www.fao.org).

Tabassum S, Ashraf M, Chen XM. 2010. Evaluation of Pakistani wheat germplasm for stripe rust resistance using molecular marker. Sci. China Life. Sci 52, 1-12. http://dx.doi.org/10.1007/s11427-010-4052-y

Wang L, Ma J, Zhou R, Wang X, Jia. 2002. Molecular tagging of the yellow rust resistance gene Yr10 in common wheat, P.1.178383 (Triticum aestivum L.) Euphytica 124, 71-73. http://dx.doi.org/10.1023/A:1015689817857

William HM, Singh RP, Huerta-Epsino J, Palacios G, Suenaga K. 2006. Characterization of genetic loci conferring adult plant resistance to leaf rust and stripe rust in spring wheat. Genome 49, 977-990. http://dx.doi.org/10.1139/g06-052

Xu H, Zhang J, Zhang P, Qie Y, Niu Y, Li H, Ma P, Xu Y, An D. 2014. Development and validation of molecular markers closely linked to the wheat stripe rust resistance gene YrC591 for marker-assisted selection. Euphytica 198(3), 317-323. http://dx.doi.org/10.1007/s10681-014-1108-2