Molecular characterization of different tea clones “Camellia sinensis L” grown at NTHRI, Shinkiari

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Research Paper 01/01/2017
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Molecular characterization of different tea clones “Camellia sinensis L” grown at NTHRI, Shinkiari

A. Waheed, G. Hina, F. S. Hamid, M. Khushi, A. Habib, A. H. Shah, M. Saqib, A. Naveed, A. Sohail, B. Madiha, A. Seemab, K. Nadia, A. Naseer
Int. J. Biosci. 10(1), 142-151, January 2017.
Copyright Statement: Copyright 2017; The Author(s).
License: CC BY-NC 4.0

Abstract

Characterize selected tea varieties and clones based on molecular characteristics having maximum bands on using markers to find out the best tea variety/clone for high yield and drought tolerance. For DNA analysis 8 genotypes of tea were screened out with 10 SCoT  (Start Codon Targeted Polymorphism) primer and 6 genotypes were screened with 4 RAPD primers. Out of these 10 SCoT primers used against genomic DNA of tea clones, however total 4 loci were generated by 3 SCoT primers with range of bands size at 200-2200bp. The S 11 proved the best primer as it showed maximum number of bands. Clone P3 and P8 resultant best for tea flush and shoot length but remained poor for genetic diversity. While clone Aa561 shows strong genetic diversity among other clones and placed out of that group. In view of different traits performance the clone Aa117/NTHRI was good comparatively on genetic diversification characters.

AL-Qurainy, Khan FS, Nadeemand M, Tarroum M. 2015. SCoT Marker for the Assessment of Genetic Diversity in Saudi Arabian Date Palm Cultivars. Pak. J. Bot 47(2), 637-643.

Chen L, Gao QK, Chen DM, Xu GJ. 2005b. The use of RAPD markers for detecting genetic diversity, relationship and molecular identification of Chinese elite tea genetic resources (Camellia sinensis L.) preserved in tea germplasm repository. Biodiv. Conserv 14, 1433-1444.

Chen L, Yamaguchi S. 2002. Genetic diversity and phylogeny of tea plant (Camellia sinensis) and its related species and varieties in the section Thea genus Camellia determined by randomly amplified polymorphic DNA analysis. J. Hort. Sci. Biotech 77, 729-732.

Chen L, Zhou ZX. 2005a. Variations of main quality components of tea genetic resources [Camellia sinensis L.] preserved in the China National Germplasm Tea Repository. Plant Foods Hum. Nutr 60, 3-35.

Collard BCY, Mackill DJ. 2009. Start codon targeted (SCoT) polymorphism: a simple, novel DNA marker technique for generating gene-targeted markers in plants. Plant Mol. Biol. Rep 27, 86-93.

Deng SK, Yin Y, Petes TD, Symington LS. 2015. Mre11-Sae2 and RPA Collaborate to Prevent Palindromic  Gene Amplification. Mol Cell 60(3), 500-8.

Doyle JJ, Doyle JL. 1987. Isolation of plant DNA from fresh tissue. Focus 12,13-15.

Iso H, Date C, Wakai K, Fukui M, Tamakoshi A. 2006. The Relationship between Green tea and total Caffeine intake and risk for self-reported type 2 diabetes among Jap. J. Adults 144, 554-62.

Mondal TK. 2002. Detection of genetic diversity among the Indian tea (Camellia sinensis) germplasm by inter-simple sequence repeats (ISSR). Euphytica 128, 307-315.

Nathaniel RK. 1992. Tea Development in Pakistan. FAO Mission Report Rome Italy.

Que Y, Pan Y, Lu Y, Yang C, Yang Y, Huang N, Xu L. 2014. Genetic analysis of diversity within a Chinese local sugarcane germplasm based on start codon targeted polymorphism. Bio. Med. Res. Int 10.

Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biology and Evolution 4(4), 406-425.

Sawant SV, Singh PK, Gupta SK, Madnala R, Tuli R. 1999. Conserved nucleotide sequences in highly expressed genes in plants. J. Genet 78, 123-131.

Sealy JR. 1958. A revision of the genus Camellia. R. Hort. Soc. London 19, 519-524.

Sobral BWS, Honeycutt CRJ. 1993. High output genetic mapping in polypoloid using PCR-generated markers Theor. Appl. Genet 86, 105 -112.

Steptoe A, Gibson E, Vuononvirta R, Williams E, Hamer M, Rycroft J, Erusalimsky J, Wardle J. 2007. “The effects of tea on psycho-physiological stress responsively and post-stress recovery: a randomized double-blind trial”. Psychopharmacology 190(1), 81-89.

Tharachand C, Immanue SC, Mythili MN. 2012. Research in Plant Biology 2(2), 01- 12.

Venables M.C, Hulston CJ, Cox HR, Jeukendrup AE. 2008. “Green tea extract ingestion, fat oxidation, and glucose tolerance in healthy humans”. Am. J. Clin. Nutr 87(3), 778-84.

Volis S, Yakbov B. 2001. Tests for adaptive RAPD Variation in population genetics structure of wild barley (Hordeum Spontaneum Koch). Biol. J. Linn. Soc 74, 289-303.

Waheed A. 2009. Pollution free tea production for developing countries. Comp. Report National Tea. Res. Inst 1-70.

Williams JGK, Kubelik AR, Livak KJ, Raflaski JA, Tingey SV. 1990. DNA polymorphism amplified by arbitrary primers are useful as genetic markers. Nucl. Acids Res 18, 6531-6535.

Zhongmao C. 1996. Evoluation and development of china as key tea producing and consuming country Proc Asia Int. Tea Conf, 96 Singapore 23-24.

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