Phylogenetic analysis of Gray-crowned Crocias (Laniellus langbianis) in Lam Dong accessed by mitochondrial DNA

Paper Details

Research Paper 08/01/2024
Views (567)
current_issue_feature_image
publication_file

Phylogenetic analysis of Gray-crowned Crocias (Laniellus langbianis) in Lam Dong accessed by mitochondrial DNA

Nguyen Thi Phuong Mai, Phan Phuoc Thinh, Ha Thanh Tung, Dinh Thanh Son, Nguyen Hong Hanh, Ho Nguyen Quynh Chi, Le Thanh Long
Int. J. Biosci. 24(1), 152-158, January 2024.
Copyright Statement: Copyright 2024; The Author(s).
License: CC BY-NC 4.0

Abstract

This study aimed to evaluate the genetic diversity of Laniellus langbianis by using mtDNA analysis. The results showed that mtDNA coverage percentage was as follows: twenty-two tRNA genes (8.64%), thirteen PCGs (63,10%), and two rRNA genes (14,47%). L. langbianis’s whole mitogenome had a regular A+T content of 54.1%. 13 PCGs in the L. langbianis mitogenome were estimated to be 11,262 bp long overall, making up 63,10% of the total mtDNA. The coverage range of the 22 t-RNA genes varied from 66 bp (trnS1, trnC) to 75 bp (trnL2). The tRNAs had an average base composition of A: 27.6%, T: 21.0%, G: 30.6%, and C: 20.8%. Phylogeny analysis revealed that L. langbianis is belonged to the family Leiothrichidae.

Cibois A, Gelang M, Alström P. 2018. Comprehensive Phylogeny of the Laughingthrushes and Allies (Aves, Leiothrichidae) and a Proposal for a Revised Taxonomy. Zoologica Scripta 47(4), 428–440.

Delacour J. 1946. Les timaliinés. L’oiseau 16, 7–36.

Dickinson EC and Christidis L. 2014. The Howard & Moore Complete Checklist of the birds of the world (4th ed.). Eastbourne, UK: Aves Press.

Gill F and Donsker D. 2017. IOC World Bird List (v 7.3).

Vietnam Red List of Endangered Species. 2023.

IUCN. 2001. IUCN Red List Categories and Criteria: Version 3.1. IUCN Species Survival Commission. IUCN, Gland, Switzerland and Cambridge, UK.

Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: Improved de novo Metazoan Mitochondrial Genome Annotation. Mol. Phylogenet. Evol. 69, 313–319.

Iwasaki W, Fukunaga T, Isagozawa R, Yamada K, Maeda Y, Satoh TP, Sado T, Mabuchi K, Takeshima H, Miya M, Nishida M. 2013. MitoFish and MitoAnnotator: A mitochondrial genome database of fish with an accurate and automatic annotation pipeline. Mol. Biol. Evol. 30, 2531–2540.

Lowe TM and Eddy SR. 1997. tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25, 955–964.

Perna NT and Kocher TD.1995. Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes. J. Mol. Evol. 41, 353–358.

Related Articles

Tumor suppressing ability of myrtenal in DMBA-induced rat mammary cancer: A biochemical and histopathological evaluation

Manoharan Pethanasamy, Shanmugam M. Sivasankaran, Saravanan Surya, Raju Kowsalya, Int. J. Biosci. 27(2), 141-150, August 2025.

Assessing tree diversity in cashew plantations: Environmental and agronomic determinants in buffer zones of Mont Sangbé National Park, western Côte d’Ivoire

Kouamé Christophe Koffi, Kouakou Hilaire Bohoussou, Serge Cherry Piba, Naomie Ouffoue, Sylvestre Gagbe, Alex Beda, Adama Tondossama, Int. J. Biosci. 27(2), 122-133, August 2025.

Anthelmintic potential of powdered papaya seed Carica papaya in varying levels against Ascaridia galli in broiler chicken

Roniemay P. Sayson, Mylene G. Millapez, Zandro O. Perez, Int. J. Biosci. 27(2), 114-121, August 2025.

Valorization of fish scale waste for the synthesis of functional gelatin-based biopolymers

N. Natarajan Arun Nagendran, B. Balakrishnan Rajalakshmi, C. Chellapandi Balachandran, Jayabalan Viji, Int. J. Biosci. 27(2), 102-113, August 2025.

Isolation and characterization of phosphate solubilising bacteria undernath Excoecaria agallocha L. of muthupet mangrove reserve

Ms. S. Alice Keerthana, V. Shanmugaraju, P. Arun, M. Poongothai, Int. J. Biosci. 27(2), 83-89, August 2025.

Hematological and biochemical parameters in mono- and associative invasions of domestic chickens by helminths and eimeria in Azerbaijan

Aygun A. Azizova, Ramin S. Mammadov, Ugur Uslu, Int. J. Biosci. 27(2), 76-82, August 2025.