Phylogenetic analysis of Gray-crowned Crocias (Laniellus langbianis) in Lam Dong accessed by mitochondrial DNA

Paper Details

Research Paper 08/01/2024
Views (722)
current_issue_feature_image
publication_file

Phylogenetic analysis of Gray-crowned Crocias (Laniellus langbianis) in Lam Dong accessed by mitochondrial DNA

Nguyen Thi Phuong Mai, Phan Phuoc Thinh, Ha Thanh Tung, Dinh Thanh Son, Nguyen Hong Hanh, Ho Nguyen Quynh Chi, Le Thanh Long
Int. J. Biosci. 24(1), 152-158, January 2024.
Copyright Statement: Copyright 2024; The Author(s).
License: CC BY-NC 4.0

Abstract

This study aimed to evaluate the genetic diversity of Laniellus langbianis by using mtDNA analysis. The results showed that mtDNA coverage percentage was as follows: twenty-two tRNA genes (8.64%), thirteen PCGs (63,10%), and two rRNA genes (14,47%). L. langbianis’s whole mitogenome had a regular A+T content of 54.1%. 13 PCGs in the L. langbianis mitogenome were estimated to be 11,262 bp long overall, making up 63,10% of the total mtDNA. The coverage range of the 22 t-RNA genes varied from 66 bp (trnS1, trnC) to 75 bp (trnL2). The tRNAs had an average base composition of A: 27.6%, T: 21.0%, G: 30.6%, and C: 20.8%. Phylogeny analysis revealed that L. langbianis is belonged to the family Leiothrichidae.

Cibois A, Gelang M, Alström P. 2018. Comprehensive Phylogeny of the Laughingthrushes and Allies (Aves, Leiothrichidae) and a Proposal for a Revised Taxonomy. Zoologica Scripta 47(4), 428–440.

Delacour J. 1946. Les timaliinés. L’oiseau 16, 7–36.

Dickinson EC and Christidis L. 2014. The Howard & Moore Complete Checklist of the birds of the world (4th ed.). Eastbourne, UK: Aves Press.

Gill F and Donsker D. 2017. IOC World Bird List (v 7.3).

Vietnam Red List of Endangered Species. 2023.

IUCN. 2001. IUCN Red List Categories and Criteria: Version 3.1. IUCN Species Survival Commission. IUCN, Gland, Switzerland and Cambridge, UK.

Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: Improved de novo Metazoan Mitochondrial Genome Annotation. Mol. Phylogenet. Evol. 69, 313–319.

Iwasaki W, Fukunaga T, Isagozawa R, Yamada K, Maeda Y, Satoh TP, Sado T, Mabuchi K, Takeshima H, Miya M, Nishida M. 2013. MitoFish and MitoAnnotator: A mitochondrial genome database of fish with an accurate and automatic annotation pipeline. Mol. Biol. Evol. 30, 2531–2540.

Lowe TM and Eddy SR. 1997. tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25, 955–964.

Perna NT and Kocher TD.1995. Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes. J. Mol. Evol. 41, 353–358.

Related Articles

Physicochemical and microbiological characterization of flours from the local variety of purple corn (Zea mays L.) produced and marketed in Katiola (Côte d’Ivoire)

Moumouny Traore*, N´Zebo Desiré Kouame, Pepiesin Marie Ange Melem Soro, Zamblé Bi Irié Abel Boli, Int. J. Biosci. 28(4), 98-106, April 2026.

In the shadows of governance: Exploring youth participation in local peacebuilding initiatives

Juramie R. Rubia, Benny R. Rubia, Nancy E. Aranjuez*, Int. J. Biosci. 28(4), 85-97, April 2026.

Evaluation of the agronomic performance, beta-carotene content and dry matter content of 228 sweet potatoes (Ipomoea batatas (L.) Lam) genotypes in Burkina Faso

Nattan Gamsore*, Koussao Some, Djakaridja Tiama, Pauline Bationo_Kando, Int. J. Biosci. 28(4), 73-84, April 2026.

Geomatics tools for agricultural and farm disaster risk management and reduction: A survey of farmers in South-South coastal communities, Nigeria

G. O. Nwodo, O. J. Ugwu, E. U. Onah, A. Ugwuoti, E. Elijah Ebinne*, O. P. Nogheghase, S. I. Ogbaa, U. E. Ahuchaogu, T. O. Ogbuji, C. P. Owuamalam-Chidi, C. O. Osuagwu, M. O. Igwenagu, O. E. Mbakaogu, J. U. Chikaire, Int. J. Biosci. 28(4), 59-72, April 2026.

Vegetable production systems in northern Côte d’Ivoire: Constraints, economic performance and integrated soil fertility management challenges

Marie Luce MÂ Semba Ouattara*, Jean Baptiste Gnelié Gnahoua, Kouassi Brahiman Kien, Kouamé Antoine N'Guessan, Yao Casimir Brou, Int. J. Biosci. 28(4), 41-50, April 2026.

Effect of temperature on the development of immature stages of Zeugodacus cucurbitae (Diptera: Tephritidae), Coquillett, 1899, A major watermelon pest in Senegal

Madeleine Ivonne Mendy*, Toffène Diome, Mamecor Faye, Mbacké Sembène, Int. J. Biosci. 28(4), 33-40, April 2026.

Structural characteristics of populations of Vitellaria paradoxa, Parkia biglobosa and Anacardium occidentale in rice-growing areas of the Tioroniaradougou subprefecture (Northern Côte d’Ivoire)

Dofoungo Koné*, Sibirina Soro, Seguena Fofana, Zana Silue, Doudjo Noufou Ouattara, Eboua Narcisse Wandan, Int. J. Biosci. 28(4), 23-32, April 2026.