Phylogenetic and in silico analysis of Q gene in wild and cultivar wheat’s

Paper Details

Research Paper 01/10/2013
Views (907)
current_issue_feature_image
publication_file

Phylogenetic and in silico analysis of Q gene in wild and cultivar wheat’s

Arash Fazeli, Zeinab Rostami
Int. J. Biosci. 3(10), 66-72, October 2013.
Copyright Statement: Copyright 2013; The Author(s).
License: CC BY-NC 4.0

Abstract

Domestication of plant and animals is presses that provide better used of them for human. Wheat is one of the oldest crops that have been domesticated 10,000 years ago. SOS and Q genes have important role in wheat domesticated. Relationship and phylogenetic of Q gene in wheat and wild relatives is very important for breeders. So, new methods such as bioinformatics can be used for this purpose. Bioinformatics analysis display that there is high conservative region among wheat and wild relatives for Q gene. Distance-matrix indicated that Triticum timopheevii and Triticum spelta have highest and lowest similarity with triticum aestivum at nucleotide level. Also phylogenetic three using UPGMA method show that Triticum timopheevii with Triticum aestivum are very closed together that it is possible that Q gene from T. timopheevii (AA genome) via introgression arrived to T. aestivum (AABBDD genome).

Bennett MD, Leitch IJ. 2010. Plant DNA C-values databas (Release 5.0, Dec. 2010). http://www.kew.org/cvalues/

Brown AHD. 2010. Variation under domestication in plants:1859 and today. Philosophical transaction of the royal society B biology science 365(1552), 2523 –2530. http://dx.doi.org/10.1098/rstb.2010.0006

Carver BF. 2009. Wheat science and trade. Wiley,Blackwell, Oxford, UK. Danvers, 569 p.

Feldman MF. 2001. Origin of cultivated wheat, 1 – 56 p. in The World Wheat Book

Feuillet  C, Muehlbauer  GJ  .2009.  Triticeae genetic  resources  in  ex  situ  genebank  collections. Genetics and Genomics of the Triticea 7, 31 –79.

Gupta PK, Mir RR, Mohan A, Kumar J. 2008. Wheatgenomics: present status and future prospects. International Journal of Plant Genomics. 1 – 36. http://dx.doi.org/10.1155/2008/896451

Huang S, Sirikhachornkit A, Faris JD, Xiujuan Su, Gill BS et al. 2002. Phylogenetic analysis of the acetyl-CoA carboxylase and 3-phosphoglycerate kinase loci in wheat and other grasses. Plant Molecular Biology 48, 805 –820. http://dx.doi.org/10.1023/A:1014868320552

Huskins CL. 1946.Fatuoid, speltoid and related mutations of oats and wheat. The Botanical Review 12, 457 –514. http://dx.doi.org/10.1007/BF02861422

Jantasuriyarat C, Vales MI, Watson CJW, Riera-Lizarazu O. 2004. Identification and mapping  of  genetic  loci  affectingthe  free-threshing habit and spike compactness in wheat (Triticum aestivum L.). Theoretical and Applied Genetics 108, 261 –273. http://dx.doi.org/10.1007/s00122-003-1432-8

Kato K, Miura H, Sawada S. 1999. QTL mapping of genes controlling ear emergence time and plant height on chromosome 5A of wheat. Theoretical and Applied Genetics 98, 472 –477.

Kato  K,  Sonokawa  R,  Miura  H,  Sawada  S. 2003. Dwarfing effect associated with the threshability gene Q on wheatchromosome 5A. Plant Breeding 122, 489 –492. http://dx.doi.org/10.1111/j.1439-0523.2003.00886.x

Kerber RE, Rowland GG. 1974. Origin of the threshingcharacter in hexaploid wheat. Canadian Journal of Genetics and Cytology 16, 145 –154. http://dx.doi.org/10.1139/g74-014

Kihara H. 1924.Cytologische und genetische Studien bei wichtigen Getreidearten mit bsonderer Rucksicht auf das Verhalten der Chromosomen und die Sterilitat in den Bastarden. Mem Coll of Sci, Kyoto Univ B, 1 –200.

Kihara H. 1944. Discovery of the DD-analyser, one of the ancestors of Triticum vulgare. Agriculture and Horticulture 19, 889 –890.

Kuckuck H. 1959.Neuere arbeiten zur Entstehung der hexaploiden Kulturweizen. Z. Pflanzenzucht 41, 205–226.

Leighty CE, Boshnakian S. 1921. Genetic behavior of the spelt form in crosses between Triticum spelta and Triticum aestivum. Journal of Agricultural Research 7, 335 –364.

MacKey J. 1954. Neutron and X-ray experiments in wheat and revision of the speltoid problem. Hereditas 40, 65 –180.

Muramatsu M. 1963. Dosage effect of the spelta gene q of hexaploid wheat. Genetics 48, 469 –482.

Nesbitt M, Samuel D. 1996. From staple crope to extinction? The archaeology and history of the hulled wheats, in hulled wheats. Promoting the conservation and use of underutilized and neglected crops 4, International Plant Genetic Resources Institute , 41 – 100.

Peng J, Ronin Y, Fahima T, Ro¨ der MS, Li Y, Nevo E, Korol A. 2003. Domestication quantitative trait loci in Triticum dicoccoides, the progenitor of wheat. Proceedings of the National Academy of Sciences, USA 100, 2489 –2494. http://dx.doi.org/10.1073/pnas.252763199

Peng JH, Sun D, nevo E. 2011. Domestication evolution, genetics and genomics in wheat. Molecular breeding 28, 281 –301.

Peleg Z, Fahima T, Korol AB, Abbo S, Saranga Y. 2011. Genetic analysis of wheat domestication and evolution under domestication. Journal of Experimental Botany 206 , 1–11

Philiptschenko J. 1934. Genetics of soft wheats. State Press Lit State College Farms. Moscow-Leningrad

Sears ER. 1952. Misdivision of univalents in common wheat. Chromosoma 4,535 –550.

Sears ER. 1956. The systematics, cytology and genetics of wheat. Handb Planzenzücht. Second Edition 2, 164–187.

Sears ER. 1954. The aneuploids of common wheat. MO Agr. Exp.Sta. Res. Bull 572, 1 –59.

Simons kj. 2005. Cloning and Characterization of the Wheat Domestication Gene, Q. phD thesis, kansas state university, manhatta, kansas, 1 –181.

Simons KJ, Fellers JP, Trick HN, Zhang Z, Tai YSH, Gill BS, Faris JD. 2006. Molecular Characterization of the Major Wheat Domestication Gene Q. Genetics 172, 547 –555. http://dx.doi.org/10.1534/genetics.105.044727

Unrau J, Smith WE, McGinnis RC. 1950. Spike density,speltoidy and compactoidy in hexaploid wheat. Canadian Journal of Research 28, 273 –276. http://dx.doi.org/10.1139/cjr50c-014

Villareal R, Mujeeb-Kazi A, Rajaram S . 1996. Inherintance of threshability in synthetic hexaploid by T. aestivumcrosses. Plant Breeding 115, 407 –409. http://dx.doi.org/10.1111/j.1439-0523.1996.tb00942.x

Watkins AE. 1927. Genetic and cytological studies in wheat. IV. Journal of Genetics 19, 81 –96. http://dx.doi.org/10.1007/BF02983118

Watkins AE. 1928. The genetics of wheat species crosses. I. Journal of Genetics 20, 1 –27. http://dx.doi.org/10.1007/BF02983089

Watkins AE. 1940. The inheritance of glume shape in Triticum. Journal of Genetics 39, 249 –264. http://dx.doi.org/10.1007/BF02982839

Zohary D, Hop f M. 2000. Domestication of plants in the old world. Oxford University Press, Oxford, 316 p.

Related Articles

Intra-population genetic diversity modeling of date palm (Phoenix dactylifera L.) population in Niger

Adamou Ibrahim Maman Laouali*, Zango Oumarou, Alio Moussa Abdourazak, Rafiou Abdoulaye, Idi Saidou Sani, Idi Garba Nana Mariama, Bakasso Yacoubou, Int. J. Biosci. 29(3), 62-70, September 2026.

Biocontrol potential of indigenous Trichoderma isolates against Fusarium wilt of cotton in Tanzania: In vitro screening and screen-house validation

Fauzia Khalid Mpiganzila*, Alfonce Leonard, Lidia Munuo, Ernest Mbega, Agatha Aloyce, Int. J. Biosci. 29(3), 44-61, September 2026.

In vitro study of antioxidant, anti-inflammatory and antihyperglycemic activity of medicinal plants

T. K. Nishath*, P. Mathavi, V. Ambikapathy, P. Prakash, A. Panneerselvam, Int. J. Biosci. 29(3), 32-43, September 2026.

Association between the IL13 rs1800925 (-1112C/T) polymorphism and Schistosoma mansoni infection intensity in a population from western Côte d’Ivoire

Bernardin Ahouty Ahouty*, Abla Edwige Sokouri, Georges Bohoussou Kassi, Innocent Allépo Abé, Martial Kassi N’djetchi, Yaya Ouangbo Ouattara, Ornella Karmelle Lydia Dago, Mathurin Yao Koffi, Thomas Konan Konan, Mathurin N’Goran Koffi, Int. J. Biosci. 29(3), 20-31, September 2026.

Abattoir-based surveillance reveals geographic clustering and risk factors for bovine tuberculosis in Tanzania

Yohana Siyajali Anatory*, Beatus Lyimo, Blandina T. Mmbaga, Joram Buza, Int. J. Biosci. 29(3), 11-19, September 2026.

In vitro assessment of the anticancer activity of quinaldic acid against human breast cancer cells (MCF-7)

N. Medhavi, S. M. Sivasankaran, K. Selvakumar, K. Harish, S. Manoharan*, Int. J. Biosci. 29(3), 1-10, September 2026.

In silico molecular docking analysis of quinaldic acid against cancer related targets

N. Medhavi, K. Harish, S. M. Sivasankaran, K. Selvakumar, B. Vidhyambigai, S. Manoharan*, Int. J. Biosci. 29(2), 129-139, August 2026.

First records of Macrogyrodactylus clarii and six species of Quadriacanthus (Monogenea) infecting Clarias gariepinus (Burchell, 1822) across four localities in Senegal

Arfang Diamanka*, Abdou Toure, Sikhou Drame, Cheikh Diop, Ngor Faye, Int. J. Biosci. 29(2), 118-128, August 2026.