Weed rhizosphere: a source of novel plant growth promoting rhizobacteria (PGPR)

Paper Details

Research Paper 01/07/2018
Views (508) Download (14)
current_issue_feature_image
publication_file

Weed rhizosphere: a source of novel plant growth promoting rhizobacteria (PGPR)

Muhammad Baber, Mahreen Fatima, Rameesha Abbas, Muther Mansoor Qaisrani, Sidra Naz, Muhammad Kashif Hanif, Tahir Naqqash
Int. J. Biosci.13( 1), 223-233, July 2018.
Certificate: IJB 2018 [Generate Certificate]

Abstract

Weeds are undesirable plants usually flourish in the unfavorable environment as continuous efforts are made to control their growth. There could be many reasons for weeds survival in hostile conditions among which association of beneficial microflora with their roots is one of the reasons. Weeds rhizosphere is studied for different plant growth promoting rhizobacteria which are successfully used to engineer the rhizosphere of many agriculture crops. However, weeds rhizosphere is still underexplored. In perspective of increasing atmospheric worth and food security, the utilization of plant growth promoting rhizobacteria for diminishing chemicals contribution in agro ecosystem that is conceivably a major issue. PGPR isolated from weeds rhizosphere are being used in different crops that help them in better stand by their plant growth and development attributes i.e. biological phosphate solubilization, N2 fixation, IAA production and as well as bio-control actives by producing different enzymes metabolites  and antibiotics . While covering the success stories of association of the PGPR, isolated from weed rhizosphere of different crop plants, this review enlighten the need of research to develop further understanding of the general and functional diversity of rhizobacteria residing especially in the rhizosphere of weedy grasses. This area of research will open new horizons to utilize PGPR from weedy grasses for plant growth promotion and yield in nutrient deficient soil which will be of great value for agriculture research and applications.

VIEWS 44

Ahmad F, Ahmad I, Khan M.2008. Screening of free-living rhizospheric bacteria for their multiple plant growth promoting activities. Microbiological research 163,173-181.

Alam S, Cui Z-j, Yamagishi T, Ishii R.2001. Grain yield and related physiological characteristics of rice plants (Oryza sativa L.) inoculated with free-living rhizobacteria. Plant production science 4, 126-130.

Amann R.2000.  Microbial aspects of biodiversity. Systematic and Applied Microbiology 23,1-8.

Badri DV, Weir TL, Van der Lelie D, Vivanco JM.2009. Rhizosphere chemical dialogues: plant–microbe interactions. Current opinion in biotechnology 20,642-650.

Berg G, Smalla K.2009. Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere. FEMS microbiology ecology 68,1-13.

Bloemberg GV, Lugtenberg BJ.2001. Molecular basis of plant growth promotion and biocontrol by rhizobacteria. Current opinion in plant biology 4, 343-350.

Brimecombe M, Leij Fa De, Lynch JM.2001. The effect of root exudates on rhizosphere microbial populations. The rhizosphere: biochemistry and organic substances at the soil-plant interface New York: Marcel Dekker.

Cardenas E, Tiedje JM.2008. New tools for discovering and characterizing microbial diversity. Current Opinion in Biotechnology 19,544-549.

Camerini S, Senatore B, Lonardo E, Imperlini E, Bianco C, Moschetti G, Rotino GL, Campion B, Defez R.2008. Introduction of a novel pathway for IAA biosynthesis to rhizobia alters vetch root nodule development. Archives of microbiology 190,67-77.

Cattelan A,Hartel P, Fuhrmann J.1999. Screening for plant growth–promoting rhizobacteria to promote early soybean growth. Soil Science Society of America Journal 63,1670-1680.

Charlesworth B.1992. Evolutionary rates in partially self-fertilizing species. The American Naturalist 140,126-148.

Chen K, Pachter L.2005.  Bioinformatics for whole-genome shotgun sequencing of microbial communities. PLoS computational biology 1,e24.

Cibichakravarthy B, Preetha R, Sundaram S, Kumar K, Balachandar D.2012. Diazotrophic diversity in the rhizosphere of two exotic weed plants, Prosopis juliflora and Parthenium hysterophorus. World Journal of Microbiology and Biotechnology 28,605-613.

Cocking E.2005. Intracellular colonization of cereals and other crop plants by nitrogen-fixing bacteria for reduced inputs of synthetic nitrogen fertilizers. In Vitro Cellular &Developmental Biology- Plant 41,369-373.

Datta A, Singh RK, Kumar S, Kumar S.2015.  An effective and beneficial plant growth promoting soil bacterium Rhizobium a review. Annals of Plant Sciences 4,933-942.

Datta C, Basu P. 200. Indole acetic acid production by a Rhizobium species from root nodules of a leguminous shrub Cajanus cajan. Microbiological research 155,123-127.

De Vleesschauwer D, Höfte M.2003. Using Serratia plymuthica to control fungal pathogens of plants. CAB Reviews 2.

Dey R, Pal K, Bhatt D, Chauhan S. 2004. Growth promotion and yield enhancement of peanut (Arachis hypogaea L.) by application of plant growth-promoting rhizobacteria. Microbiological research 159,371-394.

Dobbelaere S, Vanderleyden J, Okon Y.2003. Plant growth-promoting effects of diazotrophs in the rhizosphere. Critical reviews in plant sciences 22,107-149.

Doty SL, Oakley B, Xin G, Kang JW, Singleton G, Khan Z, Vajzovic A, Staley JT.2009. Diazotrophic endophytes of native black cottonwood and willow. Symbiosis 47,23-33.

Dutta S, Podile AR.2010. Plant growth promoting rhizobacteria (PGPR) the bugs to debug the root zone. Critical reviews in microbiology 36,232-244.

Etesami H, Maheshwari DK.2018. Use of plant growth promoting rhizobacteria (PGPRs) with multiple plant growth promoting traits in stress agriculture action mechanisms and future prospects. Ecotoxicology and environmental safety 156, 225-246.

Fickett ND, Boerboom CM, Stoltenberg DE.2013. Predicted corn yield loss due to weed competition prior to postemergence herbicide application on Wisconsin farms. Weed technology 27,54-62.

Fierer N, Bradford MA, Jackson RB. 2007. Toward an ecological classification of soil bacteria. Ecology 88,1354-1364.

Glick BR.1995. The enhancement of plant growth by free-living bacteria. Canadian Journal of Microbiology 41,109-117.

Glick BR, Penrose DM, Li J.1998. A model for the lowering of plant ethylene concentrations by plant growth-promoting bacteria. Journal of theoretical biology 190, 63-68.

Gontia-Mishra I, Sapre S, Sharma A, Tiwari S.2016. Alleviation of mercury toxicity in wheat by the interaction of mercury-tolerant plant growth-promoting rhizobacteria. Journal of Plant Growth Regulation 35,1000-1012.

Gurska J, Wang W, Gerhardt KE, Khalid AM, Isherwood DM, Huang XD, Glick BR, Greenberg BM. 200. Three year field test of a plant growth promoting rhizobacteria enhanced phytoremediation system at a land farm for treatment of hydrocarbon waste. Environmental science &technology 43,4472-4479.

Gupta G, Parihar SS, Ahirwar NK, Snehi SK, Singh V. 2015. Plant growth promoting rhizobacteria (PGPR) current and future prospects for development of sustainable agriculture. J Microb Biochem Technol 7,096-102.

Handelsman J, Rondon MR, Brady SF, Clardy J, Goodman RM.1998. Molecular biological access to the chemistry of unknown soil microbes a new frontier for natural products. Chemistry & biology 5: R245-R249.

Harinathan B, Sankaralingam S, Prabhu D, Shankar T.2014. Screening and Characterization of Phosphate Solubilizing bacterium Enterobacter cancerogenus isolated from rhizosphere soil of local weed plants. International Journal of Advanced Scientific and Technical Research 1,721-735.

Huang XD, El-Alawi Y, Penrose DM, Glick BR, Greenberg BM.2004. A multi-process phytoremediation system for removal of polycyclic aromatic hydrocarbons from contaminated soils. Environmental pollution 130,465-476.

Hughes DT, Terekhova DA, Liou L, Hovde CJ, Sahl JW, Patankar AV, Gonzalez JE, Edrington TS, Rasko DA, Sperandio V.2010. Chemical sensing in mammalian host–bacterial commensal associations. Proceedings of the National Academy of Sciences 107, 9831-9836.

Jacobsen B, Zidack N, Larson B.2004. The role of Bacillus-based biological control agents in integrated pest management systems plant diseases. Phytopathology 94,1272-1275.

Jasieniuk M, Maxwell BD.1994. Populations genetics and the evolution of herbicide resistance in weeds. Phytoprotection 75,25-35.

Kaneko T, Nakamura Y, Sato S, Asamizu E, Kato T, Sasamoto S, Watanabe A, Idesawa K, Ishikawa A, Kawashima K.2000. Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti (supplement). DNA Research 7, 381-406.

Kennedy IR, Choudhury A, Kecskés ML.2004. Non-symbiotic bacterial diazotrophs in crop-farming systems can their potential for plant growth promotion be better exploited? Soil Biology and Biochemistry 36,1229-1244.

Khan N, Khan I, Khan MA, Khan H.2004. Major Rabi and Kharif weeds of agronomic crops of District Bannu. Pak J Weed Sci Res 10,79-86.

Kong Z, Deng Z, Glick BR, Wei G, Chou M.2017. A nodule endophytic plant growth-promoting Pseudomonas and its effects on growth, nodulation and metal uptake in Medicago lupulina under copper stress. Annals of Microbiology 67,49-58.

Kunst F, Ogasawara N, Moszer I, Albertini A, Alloni G, Azevedo V, Bertero M, Bessieres P, Bolotin A, Borchert S.1997. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Nature 390,249-256.

Li J, Ovakim DH, Charles TC, Glick BR.2000. An ACC deaminase minus mutant of Enterobacter cloacae UW4No longer promotes root elongation. Current microbiology 41,101-105.

Long SR.2001. Genes, signals in the Rhizobium-legume symbiosis. Plant physiology 125,69-72.

Loper JE, Kobayashi DY, Paulsen IT.2007. The genomic sequence of Pseudomonas fluorescens Pf-5 insights into biological control. Phytopathology 97,233-238.

Lucy M, Reed E, Glick BR.2004. Applications of free living plant growth-promoting rhizobacteria. Antonie van leeuwenhoek 86, 1-25.

Morgan J, Bending G, White P.2005. Biological costs and benefits to plant-microbe interactions in the rhizosphere. Journal of experimental botany 56,1729-1739.

Mukherjee P, Roychowdhury R, Roy M.2017. Phytoremediation potential of rhizobacterial isolates from Kans grass (Saccharum spontaneum) of fly ash ponds. Clean Technologies and Environmental Policy 19,1373-1385.

Naz I, Bano A, Ul-Hassan T.2009. Isolation of phytohormones producing plant growth promoting rhizobacteria from weeds growing in Khewra salt range, Pakistan and their implication in providing salt tolerance to Glycine max L. African Journal of Biotechnology 8.

Niu DD, Liu HX, Jiang CH, Wang YP, Wang QY, Jin HL,  Guo JH.2011. The plant growth–promoting rhizobacterium Bacillus cereus AR156 induces systemic resistance in Arabidopsis thaliana by simultaneously activating salicylate-and jasmonate/ethylene-dependent signaling pathways. Molecular Plant-Microbe Interactions 24,533-542.

Nkoa R, Owen MD, Swanton CJ.2015. Weed abundance, distribution, diversity, and community analyses. Weed Science 63,64-90.

Pandey A, Durgapal A, Joshi M, Palni LMS. 1999.Influence of Pseudomonas corrugata inoculation on root colonization and growth promotion of two important hill crops. Microbiological Research 154,259-266.

Polyanskaya L, Vedina O, Lysak L, Zvyagintsev D. 2002. The growth-promoting effect of Beijerinckia mobilis and Clostridium sp. cultures on some agricultural crops. Microbiology 71,109-115.

Sarathambal C, Ilamurugu K.2014. Phosphate solubilising diazotrophic bacteria associated    with rhizosphere of weedy grasses. Indian Journal of Weed Science 46,364-369.

Schrey SD, Tarkka MT.2008. Friends and foes streptomycetes as modulators of plant    disease and symbiosis. Antonie Van Leeuwenhoek 94,11-19.

Singh N, Singh G.2018. Plant growth promoting rhizobacteria and Rhizobium combinations are the key to reduce dependence on phosphorus fertilizers in lentil-A review. Agricultural Reviews 39.

Smith RL, Schank S, Bouton J, Quesenberry K. 1978. Yield increases of tropical grasses  after inoculation with Spirillum lipoferum. Ecological Bulletins380-385.

Sturz A, Matheson B, Arsenault W, Kimpinski J, Christie B.2001. Weeds as a source of plant growth promoting rhizobacteria in agricultural soils. Canadian journal of microbiology 47,1013-1024.

Thies JE, Singleton PW, Bohlool BB.1991. Influence of the size of indigenous rhizobial populations on establishment and symbiotic performance of introduced rhizobia on field-grown legumes. Applied and Environmental Microbiology 57,19-28.

Wandersman C, Delepelaire P.2004. Bacterial iron sources from siderophores to hemophores. Annu Rev Microbiol 58,611-647.

Wu S, Cao Z, Li Z, Cheung K, Wong M.2005. Effects of biofertilizer containing N-fixer, P and K solubilizers and AM fungi on maize growth a greenhouse trial. Geoderma 125,155-166.