Stable activity of extra-cellular xylanases and its phylogeny in different Bacillus species

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Stable activity of extra-cellular xylanases and its phylogeny in different Bacillus species

Ikram-ul Haq, Abdul Ghaffar Choudhary, Asra Mahar, Nazia Parveen Gill, Muhammad Yameen
Int. J. Biosci.11( 5), 309-318, November 2017.
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Abstract

The production of cellulose free xylanase has increased its demand for waste treatment in pulping and bleaching industrial processes. Four Bacillus strains were selected on the basis of their habitation for the production of xylanase in xylan based nutrient culture. The secreted xylanase was referenced with protein marker for size of 20.3kDa in B. subtilis 168, 20.4kDa in B. pumilus, 28.6kDa B. cereus and 23.3kDa in B. amyloliquefaciens on SDS-PAGE. High activity of xylanase was observed in B. pumilus than B. amyloliquefaciens and B. cereus under harsh extremophillic culture conditions like as 28ºC with pH 4.0 and 50ºC with pH 10.0. The phylogenetic tree shows divergence of xylanase produce by B. pumilus from other 4 Bacillus species because of its evolution in proteins sequence for adaptation to severe habitate-conditions. In optimum culture medium, maximum cell biomass produced by B. pumilus (p ≤0.05) and significantly higher total extra-cellular protein contents in B. subtilis cultures. It might be permissibly nice, if origin of xylanases could be excised from B. pumilus and produced with B. subtilis 168 that could bring a revolution in pulp and paper industry. Preference for B. subtilis 168, it is being a safe bacterium for neighborhood.

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Adhyaru DN, Nikhil SB, Modi HA. 2014. Enhanced production of cellulase-free, thermo-alkali-solvent-stable xylanase from Bacillus altitudinis DHN8, its characterization and application in sorghum straw saccharification. Biocatalysis and Agricultural Biotechnology 3,182-190. https://doi.org/10.1016 /j.bcab.2013.10.003.

Avila-levy CM, André LSS, Patrícia C. 1980. Applications of zymography screening in a post-genomic era, no. 1.

Bailey MJ, Biely P, Poutanen K. 1992. interlaboratory testing of methods for assay of xylanase activity. Journal of Biotechnology 23, 257-270. https://doi.org/10.1016/0168-1656(92)90074-J.

Bajaj BK, Narendera PS. 2010. production of xylanase from an alkali tolerant streptomyces sp. 7b under solid-state fermentation, its purification, and characterization. Applied Biochemistry and Biotechnology 162, 1804-1818. https://doi.org/10. 1007/s12010-010-8960-x.

Barenholz U, Leeat K, Ron M. 2015. Increased concentration of proteins with growth rate as a result of passive resource redistribution. BioRxiv. https://doi.org/10.1101/015180.

Bergholz PW, Jesse DN, Daniel HB. 2011. environmental patterns are imposed on the population structure of Escherichia coli after fecal deposition. Applied and Environmental Microbiology 77, 211-219. https://doi.org/10.1128/AEM.01880-10.

Bertani G, Krenek P, Samajova O, Luptovciak I, Doskocilova A, Komis G, Samaj J, et al. 2006. LB (Luria-Bertani) Liquid Medium. Cold Spring Harbor Protocols, issu. 1, pdb.rec8141. https://doi.org/10.1101/pdb.rec8141.

Bim MA, Telma TF. 2000. extraction in aqueous two-phase systems of alkaline xylanase produced by Bacillus pumilus and its application in kraft pulp bleaching. Journal of Chromatography B: Biomedical Sciences and Applications 743, 349-356. https://doi.org/10.1016/S0378-4347(00)00223-1.

Binder JB, Jacqueline JB, Anthony VC, Ronald TR. 2010. Synthesis of furfural from xylose and xylan. ChemSusChem 3, 1268-1272. https://doi.org/10.1002/ cssc.201000181.

Blanco A, Teresa V, Colom JF, Pastor FIJ. 1995. Purification and properties of xylanase a from alkali-tolerant Bacillus sp. strain BP-23. Applied and Environmental Microbiology 61, 4468-4470.

Bradford MM. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Analytical Biochemistry 72, 248-254. https://doi.org/10.1016/0003-2697(76)90527-3.

Breuil C, Saddler JN. 1985. Comparison of the 3,5-Dinitrosalicylic acid and Nelson-Somogyi methods of assaying for reducing sugars and determining cellulase activity. Enzyme and Microbial Technology 7, 327-332. https://doi.org/10.1016/0141-0229(85)90111-5.

Burton RA, Gidley MJ, Fincher GB. 2010. Heterogeneity in the chemistry, structure and function of plant cell walls. Nature Chemical Biology 6, 724-732. https://doi.org/nchembio.439[pii]\r10.1038/nchembio.

Chapla D, Harshvadan P, Datta M, Amita S. 2012. Assessment of a thermostable xylanase from Paenibacillus sp. ASCD2 for application in prebleaching of eucalyptus kraft pulp. Waste and Biomass Valorization 3, 269-274.

Collins T, Charles G, Georges F. 2005. Xylanases, xylanase families and extremophilic xylanases. FEMS Microbiology Reviews 29, 3-23. https://doi.org/10.1016/j.femsre.2004.06.005.

Dodd D, Isaac KOC. 2009. Enzymatic deconstruction of xylan for biofuel production. Bioenergy 1, 2-17. https://doi.org/10.1111/j.1757-1707.2009.01004.x.

Gomez AA, Gomez KA. 1984. Statistical Procedures for Agricultural Research 6, 680.

Goto DK, Yan T. 2011. Genotypic diversity of Escherichia coli in the water and soil of tropical watersheds in Hawaii. Applied and Environmental Microbiology 77, 3988-3997. https://doi.org/10. 1128/AEM.02140-10.

Habib NR, Rowshanul M. 2009. Isolation and characterization of xylanase producing strain of Bacillus cereus from soil. Artificial Cells Blood Substitutes And Immobilization Biotechnologyartif Cells Blood Substit Immobi 1, 49-53.

Haq I. 2015. Understanding of diverse xylonolytic activity of Bacillus strains under extremophillic invitro conditions. Journal of Chemical and Pharmaceutical Research 7, 12-18.

Herzer PJ, Inouye S, Inouye M, Whittam TS. 1990. Phylogenetic distribution of branched RNA-linked multicopy single-stranded dna among natural isolates of Escherichia coli. Journal of Bacteriology 172, 6175-6181.

Kapoor ML, Nair M, Kuhad RC. 2008. Cost-effective xylanase production from free and immobilized Bacillus pumilus strain MK001 and its application in saccharification of Prosopis juliflora. Biochemical Engineering Journal 38, 88-97. https://doi.org/10.1016/j.bej.2007.06.009.

Khristova P, Kordsachia O, Patt R, Karar I, Khider T. 2006. Environmentally friendly pulping and bleaching of bagasse. Industrial Crops and Products 23, 131–39. https://doi.org/10.1016/j.indcrop.2005.05.002.

Khusro A, Barathi KK, Naif AA, Mariadhas VA, Paul A. 2016. Statistical optimization of thermo-alkali stable xylanase production from Bacillus tequilensis strain ARMATI. Electronic Journal of Biotechnology 22, 16-25. https://doi.org/ 10.1016/j.ejbt.2016.04.002.

Laemmli UK. 1970. Cleavage of Structural Proteins during the assembly of the head of bacteriophage T4. Nature 227, 680-685. https://doi.org/10.1038/ 227680a0.

Lin J, Smith MP, Chapin KC, Baik HS, Bennett GN, Foster JW. 1996. Mechanisms of acid resistance in enterohemorrhagic Escherichia coli. Applied and Environmental Microbiology 62, 3094-3100.

Marques S, Alves L, Ribeiro S, Gírio FM, Amaral-Collaço MT. 1998. Characterization of a thermotolerant and alkalotolerant xylanase from a Bacillus sp. Applied Biochemistry and Biotechnology 73, 159-172. https://doi.org/10.1007/BF02785652.

Mayende L, Wilhelmi B, Pletschke B. 2006. Cellulases (CMCases) and polyphenol oxidases from thermophilic Bacillus sp. Isolated from compost. Soil Biology and Biochemistry 38, 2963-2966.

Mechaly A, Teplitsky A, Belakhov V, Baasov T, Shoham G, Shoham Y. 2000. Overproduction and Characterization of Seleno-Methionine Xylanase T-6. Journal of Biotechnology 78, 83-86. https://doi.org/ 10.1016/S0168-1656(99)00226-6.

Mirande C, Kadlecikova E, Matulova E, Capek P, Bernalier-Donadille A, Forano E, Béra-Maillet C. 2010. Dietary Fibre degradation and fermentation by two xylanolytic bacteria bacteroides xylanisolvens XB1AT and roseburia intestinalis XB6B4 from the human intestine. Journal of Applied Microbiology 109, 451-460. https://doi.org/10.1111/ j.1365-2672.2010.04671.x.

Motta F, Andrade CP, Santana M. 2013. A review of xylanase production by the fermentation of xylan: classification, characterization and applications. Intech Chapter 10, 251-275. https://doi.org/10.5772/53544.

Pinto-Tomas A, Uribe-Lorio L, Blanco J, Fontecha G, Rodriguez C, Mora M, Janzen D, Chavarria F, Diaz J, Sittenfeld A. 2007. Enzymatic activities of bacteria isolated from the digestive tract of caterpillars and the pupal content of automeris zugana and rothschildia lebeau (Lepidoptera saturniidae). Revista de biología tropical 55, 401-415.

Prade RA. 1996. Xylanases: From biology to biotechnology. Biotechnology and Genetic Engineering Review 13, 101-131. https://www.ncbi. nlm.nih.gov/pubmed/8948110.

Ramalingam C, Harris A. 2010. Xylanases and its application in food industry: A review. Journal of Experimental Sciences 1, 1-11. http://jexpsciences.com/index.php/jexp/article/viewArticle/4162.

Raul D, Biswas T, Mukhopadhyay S, Das SK, Gupta S. 2014. Production and partial purification of alpha amylase from Bacillus subtilis (Mtcc 121) using solid state fermentation. International Food Research Journal 21, 831-837. https://doi.org/10. 1155/2014/568141.

Rhodes MW, Kator H. 1988. Survival of Escherichia coli and Salmonella sp. in estuarine environments. Applied Environmental Microbiology 54, 2902-2907.

Saelee K, Yingkamhaeng N, Nimchua N, Sukyai P. 2016. An environmentally friendly xylanase-assisted pretreatment for cellulose nanofibrils isolation from sugarcane bagasse by high-pressure homogenization. Industrial Crops and Products 82,149-160. https://doi.org/10.1016/j.indcrop.2015.11.064.

Saleem M, Aslam F, Akhtar MS, Tariq M, Rajoka MI. 2012. Characterization of a thermostable and alkaline xylanase from Bacillus sp. and its bleaching impact on wheat straw pulp. World Journal of Microbiology and Biotechnology 28, 513-522.

Saleema M, Tabassuma MR, Yasminb R, Imran M. 2009. Potential of xylanase from thermophilic Bacillus sp. XTR-10 in biobleaching of wood kraft pulp. International Biodeterioration and Biodegradation 63, 1119-1124.

Sanghi A, Garg N, Gupta VK, Mittal A, Kuhad RC. 2010. One-step purification and characterization of cellulase-free xylanase produced by alkalophilic Bacillus subtilis ASH. Brazilian Journal of Microbiology 41, 467-476. https://doi.org/10.1590/S1517-83822010000200.

Saxena RK, Dutt K, Agarwal L, Nayyar P. 2007. A highly thermostable and alkaline amylase from a Bacillus sp. PN5. Bioresource Technology 98, 260-265. https://doi.org/10.1016/j.biortech.2006.01.016.

Scheller HV, Ulvskov P. 2010. Hemicelluloses. Annual Review of Plant Biology 61, 263-289. https://doi.org/10.1146/annurev-arplant-042809-112315.

Selvendran RR. 1985. Developments in the chemistry and biochemistry of pectic and hemicellulosic polymers. Journal of Cell Science 2, 51-88.

Singh Y, Ahmad J, Musarrat J, Ehtesham NZ, Hasnain SE. 2013. Emerging importance of holobionts in evolution and in probiotics. Gut Pathogens 5, 12. https://doi.org/10.1186/1757-4749.

Sneath PHA, Sokal R. 1962. Numerical taxonomy. Nature 193, 855-860. https://doi.org/doi: 10.1038 /193855a0.

Sunna A, Antranikian G. 1997. Xylanolytic enzymes from fungi and bacteria. Critical Reviews in Biotechnology 17, 39-67. https://doi.org/10.3109/ 07388559709146606.

Suurnäkki A, Tenkanen M, Buchert J, Viikari L. 1997. Hemicellulases in the Bleaching of Chemical Pulps. Advances in Biochemical Engineering and Biotechnology 57, 261-287. https://doi.org/10.1007/ BFb0102077.

Tamura K, Battistuzzi FU, Billing-Ross P, Murillo O, Filipski A, Kumar S. 2012. Estimating divergence times in large molecular phylogenies. Proceedings of the National Academy of Sciences of the United States of America 109, 19333-19338. https://doi.org/10.1073/pnas.1213199109.

Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0. Molecular Biology and Evolution 30, 2725-2729. https://doi.org/10.1093/ molbev/mst197.

Tani S, Kawaguchi T, Kobayashi T. 2014. Complex regulation of hydrolytic enzyme genes for cellulosic biomass degradation in filamentous fungi. Applied Microbiology and Biotechnology 98, 6339-6352. https://doi.org/10.1007/s00253-014-5707-6.

Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, Bidet P, Bingen E, et al. 2009. Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genetics 5, e1000344  https://doi.org/10.1371/ journal.pgen.1000344.

Viikari L. 1994. Xylanases in bleaching: From an idea to the industry. FEMS Microbiology Reviews 13, 335-350. https://doi.org/10.1016/0168-6445(94)90090-6.

Wirth T, Falush D, Lan R, Colles F, Mensa P, Wieler LH, Karch H, et al. 2006. Sex and virulence in Escherichia coli: an evolutionary perspective. Molecular Microbiology 60, 1136-1151. https://doi.org/10.1111/j.1365-2958.2006.05172.x.

Wong KK, Tan LU, Saddler JN. 1988. Multiplicity of beta-1,4-xylanase in microorganisms: Functions and applications. Microbiological Reviews 52, 305-317.

Xu X, Liu M, Dai X. 2015. Expression of recombinant bacillus amyloliquefaciens xylanase A in Escherichia coli and potential application in xylan hydrolysis. BioResources 10, 4694-4710.

Zhi S, Li Q, Yasui Y, Edge T, Topp E, Neumann NF. 2015. Assessing host-specificity of escherichia coli using a supervised learning logic-regression-based analysis of single nucleotide polymorphisms in intergenic regions. Molecular Phylogenetics and Evolution 92, 72-81. https://doi.org/10.1016/j. ympev. 2015.06.007.