Antimicrobial resistance profiling and molecular characterization of a multidrug-resistant Salmonella enterica serovar Typhimurium from poultry environments in Bangladesh

Paper Details

Research Paper 25/02/2026
Views (23)
current_issue_feature_image
publication_file

Antimicrobial resistance profiling and molecular characterization of a multidrug-resistant Salmonella enterica serovar Typhimurium from poultry environments in Bangladesh

Rashna Islam, Rubaya, Jahangir Alam, Anjuman Ara Bhuyan, Md. Abdul Alim, M. M. Kamal Hossain, Mir Rowshan Akter, Md. Sagir Ahmed, Shohel Mahmud*
Int. J. Biosci. 28(2), 201-209, February 2026.
Copyright Statement: Copyright 2026; The Author(s).
License: CC BY-NC 4.0

Abstract

The emergence of multidrug-resistant (MDR) Salmonella enterica in poultry production systems poses a significant threat to animal health, food safety, and public health worldwide. This study investigated the occurrence, antimicrobial resistance patterns, and molecular identity of zoonotic Salmonella spp. isolated from poultry environments in Bangladesh. A total of 60 samples, including cloacal swabs, tracheal swabs, fecal samples, and eggshell surfaces, were collected from poultry farms and analyzed using conventional culture-based methods and MALDI-TOF mass spectrometry. Salmonella spp. were detected in three samples, corresponding to an overall prevalence of 5%. Antimicrobial susceptibility testing of five Salmonella isolates, including three field isolates and two reference strains, was performed against 20 antibiotics representing multiple classes following CLSI guidelines. In contrast, most isolates exhibited broad susceptibility, one strain, designated Salmonella sp. ABD-261, displayed a multidrug-resistant phenotype, showing resistance to trimethoprim, gentamicin, tetracycline, and colistin sulfate. Molecular identification based on 16S rRNA gene sequencing and phylogenetic analysis confirmed ABD-261 as Salmonella enterica serovar Typhimurium. Notably, phylogenetic reconstruction revealed genetic divergence from closely related reference strains, suggesting potential evolutionary distinctiveness. The detection of an MDR zoonotic S. enterica serovar Typhimurium strain in poultry environments underscores the ongoing risk of antimicrobial resistance dissemination through the food chain. These findings highlight the importance of continuous surveillance, prudent antibiotic use, and strengthened biosecurity measures to mitigate the public health impact of poultry-associated Salmonella in Bangladesh.

Antunes P, Mourão J, Campos J, Peixe L. 2016. Salmonellosis: the role of poultry meat. Clinical Microbiology and Infection 22, 110–121. https://doi.org/10.1016/j.cmi.2015.12.004

Cardinale E, Tall F, Cissé M, Guèye EF, Salvat G, Mead GC. 2004. Risk factors for Salmonella enterica infection in Senegalese broiler-chicken flocks. Preventive Veterinary Medicine 63, 151–161. https://doi.org/10.1016/j.prevetmed.2004.03.002

Clinical and Laboratory Standards Institute (CLSI). 2020. Performance standards for antimicrobial susceptibility testing. 30th ed. CLSI supplement M100. Wayne, PA: CLSI.

Deng X, den Bakker HC, Hendriksen RS. 2016. Genomic epidemiology: whole-genome sequencing for surveillance and outbreak investigation of foodborne bacterial pathogens. Annual Review of Food Science and Technology 7, 353–374. https://doi.org/10.1146/annurev-food-041715-033259

Elbediwi M, Li Y, Paudyal N, Pan H, Li X, Xie S, Rajkovic A, Feng Y, Fang W, Rankin SC, Yue M. 2019. Global burden of colistin-resistant bacteria: mobilized colistin resistance genes study (1980–2018). Microorganisms 7, 461. https://doi.org/10.3390/microorganisms7100461

European Food Safety Authority. 2019. The European Union one health 2018 zoonoses report. EFSA Journal 17, e05926. https://doi.org/10.2903/j.efsa.2019.5926

Feasey NA, Dougan G, Kingsley RA, Heyderman RS, Gordon MA. 2012. Invasive non-typhoidal Salmonella disease: An emerging and neglected tropical disease in Africa. The Lancet 379, 2489–2499. https://doi.org/10.1016/S0140-6736(11)61752-2

Foysal M, Imam T, Das SB, Gibson JS, Mahmud R, Gupta SD, Fournié G, Hoque MA, Henning J. 2024. Association between antimicrobial usage and resistance on poultry farms in Bangladesh. Frontiers in Veterinary Science 11, 1435111. https://doi.org/10.3389/fvets.2024.1435111

Gast RK, Regmi P, Guraya R, Jones DR, Anderson KE, Karcher DM. 2019. Contamination of eggs by Salmonella enteritidis in experimentally infected laying hens of four commercial genetic lines in conventional cages and enriched colony housing. Poultry Science 98(10), 5023–5027. https://doi.org/10.3382/ps/pez222

Liu YY, Wang Y, Walsh TR, Yi LX, Zhang R, Spencer J, Doi Y, Tian G, Dong B, Huang X, Yu LF, Gu D, Ren H, Chen X, Lv L, He D, Zhou H, Liang Z, Liu JH, Shen J. 2016. Emergence of plasmid-mediated colistin resistance mechanism MCR-1. The Lancet Infectious Diseases 16, 161–168. https://doi.org/10.1016/S1473-3099(15)00424-7

Magiorakos AP, Srinivasan A, Carey RB, Carmeli Y, Falagas ME, Giske CG, Harbarth S, Hindler JF, Kahlmeter G, Olsson-Liljequist B, Paterson DL, Rice LB, Stelling J, Struelens MJ, Vatopoulos A, Weber JT, Monnet DL. 2012. Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria. Clinical Microbiology and Infection 18, 268–281. https://doi.org/10.1111/j.1469-0691.2011.03570.x

Mahmud MS, Bari ML, Hossain MA. 2011. Prevalence of Salmonella serovars and antimicrobial resistance profiles in poultry of Bangladesh. Foodborne Pathogens and Disease 8, 1117–1123. https://doi.org/10.1089/fpd.2011.0917

Majowicz SE, Musto J, Scallan E, Angulo FJ, Kirk M, O’Brien SJ, Jones TF, Fazil A, Hoekstra RM. 2010. The global burden of nontyphoidal Salmonella gastroenteritis. Clinical Infectious Diseases 50, 882–889. https://doi.org/10.1086/650733

McEwen SA, Collignon PJ. 2018. Antimicrobial resistance: A one health perspective. Microbiology Spectrum 6, ARBA-0009-2017. https://doi.org/10.1128/microbiolspec.ARBA-0009-2017

Popy NN, Khan MFR, Islam MS, Biswas L, Yasmin L, Siddique MP, Rahman M, Rahman MB. 2025. Serovar-specific antimicrobial resistance and virulence profiles of Salmonella enterica in Bangladesh. MicrobiologyOpen 14, e70091. https://doi.org/10.1002/mbo3.70091

Rahman MT, Sobur MA, Islam MS, Levy S, Hossain MJ, El Zowalaty ME, Rahman AT, Ashour HM. 2020. Zoonotic diseases: Etiology, impact, and control. Microorganisms 8, 1405. https://doi.org/10.3390/microorganisms8091405

Thai TH, Hirai T, Lan NT, Yamaguchi R. 2012. Antibiotic resistance profiles of Salmonella serovars isolated from retail pork and chicken meat in North Vietnam. International Journal of Food Microbiology 156, 147–151. https://doi.org/10.1016/j.ijfoodmicro.2012.03.016

Wang Y, Zhang R, Li J, Wu Z, Yin W, Schwarz S, Tyrrell JM, Zheng Y, Wang S, Shen Z, Liu Z, Liu JH, Shen J. 2017. Comprehensive resistome analysis reveals the prevalence of NDM and MCR-1 in Chinese poultry production. Nature Microbiology 2, 16260. https://doi.org/10.1038/nmicrobiol.2016.260

Zhou Z, Alikhan NF, Mohamed K, Fan Y, Achtman M. 2020. The EnteroBase user’s guide with case studies on Salmonella. Genome Research 30, 138–152. https://doi.org/10.1101/gr.251678.119

Related Articles

Protein profiling and antioxidant enzymatic activity of the ethanol extract of Cocculus hirsutus (L.) W. Theob. efficacy against Rhynchophorus ferrugineus

Marimuthu Malarvizhi, Jothi Dheivasikamani Abidharini, Arthi Boro, Murugesan Loganathan, Krishnaswamy Sujatha*, ArumugamVijaya Anand, Int. J. Biosci. 28(2), 222-241, February 2026.

Impact of organic and mineral fertilizers on the growth and biomass production of amaranth (Amaranthus cruentus L.) in Burkina Faso

Sidnoma Marie Emeline Vanessa Sompougdou*, Hugues Roméo Bazié, Philippe Bayen, Caroline Bassono, Int. J. Biosci. 28(2), 210-221, February 2026.

Lived experiences, psychosocial challenges and quality of life of drug surrenders

Van Ryan I. Alipoyo*, Int. J. Biosci. 28(2), 184-200, February 2026.

Evaluation of the sensorial quality of peppermint (Mentha piperita) ice cream

Iriz Klir Austria, Michael Sta. Ana, Marigen E. Toraja*, Int. J. Biosci. 28(2), 177-183, February 2026.

Epidemiology of polycystic ovary syndrome among young adult women: A cross sectional analysis

Ch. B. Praveena Devi*, S. Priya, P. Tanvi, S. Swathika, G. Bhavitha Sri, Int. J. Biosci. 28(2), 170-176, February 2026.

Comparative assessment of mixed and intercropping of lentil (Lens culinaris) and sunflower (Helianthus annuus)

Md. Shamim Ahmed*, Mohammad Tojammel Haq, Int. J. Biosci. 28(2), 151-158, February 2026.

Extraction of biologically active substances of fungi isolated from various ecosystems and evaluation of their effect

K. F. Bakhshaliyeva*, G. A. Tomuyeva, A. R. Hasanova, V. Y. Hasanova, A. M. Hasanov, S. E. Nagiyeva, A. G. Eyvazov, G. T. Huseynova, G. A. Qasimova, V. K. Isayeva, Int. J. Biosci. 28(2), 143-150, February 2026.