Molecular assessment of hybridity in F1 (Luffa acutangula × Luffa cylindrica) through SSR marker

Paper Details

Research Paper 07/09/2024
Views (872)
current_issue_feature_image
publication_file

Molecular assessment of hybridity in F1 (Luffa acutangula × Luffa cylindrica) through SSR marker

Md. Shamim Ahmed, Mohammad Sohel, Samiul Hosain Anik, Homayra Huq, Md. Ekramul Hoque
Int. J. Biosci. 25(3), 148-157, September 2024.
Copyright Statement: Copyright 2024; The Author(s).
License: CC BY-NC 4.0

Abstract

An experiment was carried out to test the hybridity of offspring of Luffa acutangula and Luffa cylindrica through SSR marker. Experiment was conducted at the laboratory of Department of Biotechnology, Sher-e-Bangla Agricultural University, Dhaka-1207, Bangladesh. Hybridity test through molecular maker is a new concept in the field of applied molecular biology in agriculture. The present finding indicated that SSR primer can be used for detection of polymorphism among the parents of any hybrid. The identified polymorphic primer can be used for hybrid identification for commercial purpose. All the seed companies producing and selling hybrid seeds can use this molecular technique. It will save money, time and manpower than traditional methods of hybridity test. Seven ridge gourd and three sponge gourd genotypes were used as parents. For hybridity test, initially different SSR primers were used to establish polymorphism among the parents of each hybrid. The identified polymorphic primers were used to screen the hybridity test. It was noticed that three primers viz. BoG-21, BoG-76 and BoG-117 showed polymorphism in the parents and their corresponding hybrid. It was noted that, a 550bp DNA fragment was amplified in male parent and hybrid of Bogra×RIG 47-2 which was absent in female genotype. 200 bp DNA fragment was amplified in male parent and hybrid in case of Bogra×BARI Jhinga-1. This DNA band can be used for large scale screening of that specific hybrid variety for seed purity in commercial purpose. The parents of one hybrid (Faridpur×KRG 02) showed monomorphic DNA band and one of the SSR primers viz. BoG 118 was not amplified in any ridge gourd and sponge gourd genotype under investigation. Hybridity (Luffa acutangula × Luffa cylindrica) was identified by the same DNA fragment that found in male parents and F1 offspring.

Andersen JR, Lubberstedt T. 2003. Functional markers in plants. Trends in Plant Science 8, 554-560.

Bosland PW, Votava EJ. 2000. Peppers: vegetable and spice Capsicums. CAB International, Wallingford, 204 p.

Jahufer M, Barret B, Griffiths A and Woodfield D. 2003. DNA fingerprinting and genetic relationships among white clover cultivars. Proceedings of the New Zealand Grassland Association.

Karp A, Kresovich S, Bhat K, Ayad W and Hodgkin T. 1997. Molecular tools in plant genetic resources conservation: a guide to the technologies. IPGRI. Rome, Italy.

Litt M, Luty JA. 1989. A hypervariable microsatellite revealed by in vitro amplication of a dinucleotide repeat within the cardiac muscle action gene. American Journal of Human Genetics 44, 388-396.

Mackill D, Nguyen H, Zhang J. 1997. Use of molecular markers in plant improvement programs for rainfed lowland rice. Field crops research 64, 177-85.

McCouch S, Kochert G, Yu Z. 1988. Molecular mapping of rice chromosomes. Theoretical and Applied Genetics 76, 815-29.

Pandey S, Ansari WA, Choudhary BR. 2018. Microsatellite analysis of genetic diversity and population structure of hermaphrodite ridge gourd (Luffa hermaphrodita). http://dx.doi.org/10.1007/s13205-017-1030-0.

Ravi R Rathod DR, Mehta HP. 2014. Molecular characterization of ridge gourd (Luffa acutangula L.) and sponge gourd (Luffa cylindrica l.) genotypes through PCR based markers, Paper No. 343.

Varshney RK, Sigmund R, Borner A, Korzun V, Stein N, Sorrells ME, Langridge P, Graner A. 2005. Interspecific transferability and comparative mapping of barley EST–SSR markers in wheat rye and rice. Plant Science 168, 195-202.

Varshney RK, Thudi M, Aggarwal R, Börner, A. 2007. Genic molecular markers in plants: development and applications. In: Varshney RK, Tuberosa R (eds) Genomics-assisted crop improvement: genomics approaches and platforms.Springer, Dordrecht 1, 13-29.

Williams JGK, Kubelik AE, Levak KJ, Rafalski JA, Tingey SC. 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research 28, 6531-6535.

Wu Hai-Bin G, HaoLiu, Peng He, Xiao-Li. 2014. Molecular breeding. ISSN : 1380-3743.

Zuhuang FY, Chen JF, Staub JE. 2004. Assessment of genetic relationships among Cucumis spp. by SSR and RAPD marker analysis. Jounral of Plant Breeding 123(2), 167-172.

Related Articles

In vitro assessment of the anticancer activity of quinaldic acid against human breast cancer cells (MCF-7)

N. Medhavi, S. M. Sivasankaran, K. Selvakumar, K. Harish, S. Manoharan*, Int. J. Biosci. 29(3), 1-10, September 2026.

In silico molecular docking analysis of quinaldic acid against cancer related targets

N. Medhavi, K. Harish, S. M. Sivasankaran, K. Selvakumar, B. Vidhyambigai, S. Manoharan*, Int. J. Biosci. 29(2), 129-139, August 2026.

First records of Macrogyrodactylus clarii and six species of Quadriacanthus (Monogenea) infecting Clarias gariepinus (Burchell, 1822) across four localities in Senegal

Arfang Diamanka*, Abdou Toure, Sikhou Drame, Cheikh Diop, Ngor Faye, Int. J. Biosci. 29(2), 118-128, August 2026.

Comparative predictive performance of anthropometric indices and associated risk factors for obesity among Beninese adults: A cross-sectional study

Ganlaky D. Boris, Sègbo Julien A. Gaetan*, Dossou David, Sossa J. Charles, Akpovi D. Casimir, Agbangla Clement, Int. J. Biosci. 29(2), 105-117, August 2026.

Proximate, mineral and vitamin composition of Uvaria chamae P. Beauv. (Annonaceae) seed flour from Korhogo, northern Côte d’Ivoire

Nyamien Yves Bleouh Jean*, Anon Attoh Hyacinthe, Diallo Koffi, Biego Godi Henri, Int. J. Biosci. 29(2), 97-104, August 2026.

Acute toxicity of seeds from Sphenostylis stenocarpa (Hochst ex A. Rich.) Harms

Wilfried Zanmenou*, Razack Osseni, Mahouglo Barnabé Houessou, Chimène Agrippine Rodogune Yelouassi, Comlan Kintomagnimessè Célestin Tchekessi, Philippe Sessou, Anatole Laleye, Pierre Dossou-Yovo, Int. J. Biosci. 29(2), 89-96, August 2026.

Stabilization of cashew apple juice with chitosan: clarification and microbiological quality

Kokora Aya Philomène*, Coulibaly Adama, Cissé Mohamed, Coulibaly Bintou, Konan N’guessan Ysidor, Godi Henri Marius Biego, Int. J. Biosci. 29(2), 76-88, August 2026.

Implementation and evaluation of limited face to face classes: basis for adoption of health and safety manual

Christian Jude B. Calunsag*, Int. J. Biosci. 29(2), 65-75, August 2026.