Molecular assessment of hybridity in F1 (Luffa acutangula × Luffa cylindrica) through SSR marker

Paper Details

Research Paper 07/09/2024
Views (763)
current_issue_feature_image
publication_file

Molecular assessment of hybridity in F1 (Luffa acutangula × Luffa cylindrica) through SSR marker

Md. Shamim Ahmed, Mohammad Sohel, Samiul Hosain Anik, Homayra Huq, Md. Ekramul Hoque
Int. J. Biosci. 25(3), 148-157, September 2024.
Copyright Statement: Copyright 2024; The Author(s).
License: CC BY-NC 4.0

Abstract

An experiment was carried out to test the hybridity of offspring of Luffa acutangula and Luffa cylindrica through SSR marker. Experiment was conducted at the laboratory of Department of Biotechnology, Sher-e-Bangla Agricultural University, Dhaka-1207, Bangladesh. Hybridity test through molecular maker is a new concept in the field of applied molecular biology in agriculture. The present finding indicated that SSR primer can be used for detection of polymorphism among the parents of any hybrid. The identified polymorphic primer can be used for hybrid identification for commercial purpose. All the seed companies producing and selling hybrid seeds can use this molecular technique. It will save money, time and manpower than traditional methods of hybridity test. Seven ridge gourd and three sponge gourd genotypes were used as parents. For hybridity test, initially different SSR primers were used to establish polymorphism among the parents of each hybrid. The identified polymorphic primers were used to screen the hybridity test. It was noticed that three primers viz. BoG-21, BoG-76 and BoG-117 showed polymorphism in the parents and their corresponding hybrid. It was noted that, a 550bp DNA fragment was amplified in male parent and hybrid of Bogra×RIG 47-2 which was absent in female genotype. 200 bp DNA fragment was amplified in male parent and hybrid in case of Bogra×BARI Jhinga-1. This DNA band can be used for large scale screening of that specific hybrid variety for seed purity in commercial purpose. The parents of one hybrid (Faridpur×KRG 02) showed monomorphic DNA band and one of the SSR primers viz. BoG 118 was not amplified in any ridge gourd and sponge gourd genotype under investigation. Hybridity (Luffa acutangula × Luffa cylindrica) was identified by the same DNA fragment that found in male parents and F1 offspring.

Andersen JR, Lubberstedt T. 2003. Functional markers in plants. Trends in Plant Science 8, 554-560.

Bosland PW, Votava EJ. 2000. Peppers: vegetable and spice Capsicums. CAB International, Wallingford, 204 p.

Jahufer M, Barret B, Griffiths A and Woodfield D. 2003. DNA fingerprinting and genetic relationships among white clover cultivars. Proceedings of the New Zealand Grassland Association.

Karp A, Kresovich S, Bhat K, Ayad W and Hodgkin T. 1997. Molecular tools in plant genetic resources conservation: a guide to the technologies. IPGRI. Rome, Italy.

Litt M, Luty JA. 1989. A hypervariable microsatellite revealed by in vitro amplication of a dinucleotide repeat within the cardiac muscle action gene. American Journal of Human Genetics 44, 388-396.

Mackill D, Nguyen H, Zhang J. 1997. Use of molecular markers in plant improvement programs for rainfed lowland rice. Field crops research 64, 177-85.

McCouch S, Kochert G, Yu Z. 1988. Molecular mapping of rice chromosomes. Theoretical and Applied Genetics 76, 815-29.

Pandey S, Ansari WA, Choudhary BR. 2018. Microsatellite analysis of genetic diversity and population structure of hermaphrodite ridge gourd (Luffa hermaphrodita). http://dx.doi.org/10.1007/s13205-017-1030-0.

Ravi R Rathod DR, Mehta HP. 2014. Molecular characterization of ridge gourd (Luffa acutangula L.) and sponge gourd (Luffa cylindrica l.) genotypes through PCR based markers, Paper No. 343.

Varshney RK, Sigmund R, Borner A, Korzun V, Stein N, Sorrells ME, Langridge P, Graner A. 2005. Interspecific transferability and comparative mapping of barley EST–SSR markers in wheat rye and rice. Plant Science 168, 195-202.

Varshney RK, Thudi M, Aggarwal R, Börner, A. 2007. Genic molecular markers in plants: development and applications. In: Varshney RK, Tuberosa R (eds) Genomics-assisted crop improvement: genomics approaches and platforms.Springer, Dordrecht 1, 13-29.

Williams JGK, Kubelik AE, Levak KJ, Rafalski JA, Tingey SC. 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research 28, 6531-6535.

Wu Hai-Bin G, HaoLiu, Peng He, Xiao-Li. 2014. Molecular breeding. ISSN : 1380-3743.

Zuhuang FY, Chen JF, Staub JE. 2004. Assessment of genetic relationships among Cucumis spp. by SSR and RAPD marker analysis. Jounral of Plant Breeding 123(2), 167-172.

Related Articles

Optimizing soybean (Glycine max L. Merr.) performance through rhizobial inoculation and planting density in Kétou, Benin

Mahougnon Charlotte Carmelle Zoundji*, Ibouraïman Balogoun, Pascal Gbenou, Tobi Moriaque Akplo, Carlosse Djeho, Félix Kouélo Alladassi, Int. J. Biosci. 28(6), 99-107, June 2026.

Genetic admixture and the philosophy of diplomacy in central Asia: Evidence from intercultural dialogue, governance and genomic data

Shafee Ur Rehman, Waqar Ahmed Khan, Iqra Jamil, Muhammad Abdullah, Int. J. Biosci. 28(6), 89-98, June 2026.

Synthesizing and integrating environmental awareness and bio-intensive gardening under the Gulayan sa Paaralan (SIBUG) extension project

Violeta F. Collado*, Analyn V. Sagun, Angelina T. Gonzales, Marilyn D. Respicio, Int. J. Biosci. 28(6), 82-88, June 2026.

Diversity of insects related to maize (Zea mays) production in Ferkéssédougou region, Côte d’Ivoire

Fondio Drissa, Dao Hassane, Soro Lacina*, Sib Ollo, Kouadio Roger Hosphade Kouassi, Soro Senan, Yeboue N’guessan Lucie, Int. J. Biosci. 28(6), 75-81, June 2026.

Diuretic activity assessment of an aqueous extract of Zanthoxylum gilletii (Rutaceae) stem bark in rats

Akoua Jeanne Kanga*, Essoi Kouametchi Hermann, Françoise Assamala Fossou, Kacou Jules Marius Djetouan, Kouao Augustin Amonkan, Int. J. Biosci. 28(6), 68-74, June 2026.

Phytochemical investigation and in vitro evaluation of cholinesterase inhibitory and antioxidant properties of Aglaonema hookerianum stems

K. M. Monirul Islam, Simin Shabnam Lopa, Joya Rani, Md. Aslam Sheikh, Md. Golam Sadik*, Int. J. Biosci. 28(6), 60-67, June 2026.

Comparative responses of rice (Oryza sativa L.) to iron toxicity, drought and salinity stress: Morphological, physiological, biochemical and molecular regulation mechanisms

Yaya Touré*, Brahima André Soumahoro, Arthur Martin Affery, Tchoa Koné, Mongomaké Koné, Int. J. Biosci. 28(6), 37-50, June 2026.