Molecular characteristic of bacteria associated with healthy Porites lutea coral of South Malang Waters, Indonesia

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Research Paper 01/12/2017
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Molecular characteristic of bacteria associated with healthy Porites lutea coral of South Malang Waters, Indonesia

Muhammad Arif Asadi, Bambang Semedi, Muliawati Handayani, Umi Zakiyah
J. Bio. Env. Sci.11( 6), 244-250, December 2017.
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Abstract

Coral reefs are the most diverse of all marine ecosystem yet highly vulnerable to diseases and climate change impacts in which approximately 30% of corals have been affected globally. Porites lutea is among the most widespread coral in Indonesia, yet it is also highly impacted by the diseases. This study aimed to isolate, molecularly characterize and identify the associated bacteria that dominated the healthy P. lutea. The coral sampling was using snorkeling while streak method was used for bacterial isolation and purification. Molecular identification consisted of DNA extraction, 16S rRNA PCR amplification and sequencing of 16S rRNA gene flow, and BLAST homology. Results showed that the bacterium associated with healthy P. lutea was closely related to Marinobacter xestospongiae, Marinobacter zheijiangensis, and Marinobacter mobililis with a similarity of 96%, 96%, and 95% respectively. The bacterium can be used as a candidate for further anti-pathogenic bacterial test and may be able to inhibit the growth of pathogenic bacteria of coral diseases particularly Pink Line Syndrome that highly impact P. lutea in many areas.

VIEWS 17

Asadi MA, Andrimida A. 2017. Economic valuation of coral reefs ecosystem of Bangsring, Banyuwangi, Indonesia. ECSOFiM 04, 144-152. https://doi.org/10.21776/ub.ecsofim.2017.004.02.04

Bakkiyaraj D, Sivasankar C, Pandian, SK. 2013. Anti-pathogenic Potential of Coral Associated Bacteria Isolated from Gulf of Mannar Against Pseudomonas aeruginosa. Indian Journal of Microbiology 53, 111-113. https://doi.org/10.1007/s12088-012-0342-3

Bruno JF. 2013. Coral Reefs: Building a Better Crystal Ball. Current Biology 23, R473-R475. https://doi.org/10.1016/j.cub.2013.04.042

Case RJ, Boucher Y, Dahllöf I, Holmström C, Doolittle WF, Kjelleberg S. 2007. Use of 16S rRNA and rpoB Genes as Molecular Markers for Microbial Ecology Studies. Applied and Environmental Microbiology 73, 278-288. https://doi.org/10.1128/AEM.01177-06

Dove SG, Hoegh-Guldberg O, Ranganathan S. 2001. Major colour patterns of reef-building corals are due to a family of GFP-like proteins. Coral Reefs 19, 197-204. https://doi.org/10.1007/PL00006956

Fisher R, O’Leary RA, Low-Choy S, Mengersen K, Knowlton N, Brainard RE, Caley MJ. 2015. Species Richness on Coral Reefs and the Pursuit of Convergent Global Estimates. Current Biology 25, 500-505. https://doi.org/10.1016/j.cub.2014.12.022

Gignoux-Wolfsohn SA, Vollmer SV. 2015. Identification of Candidate Coral Pathogens on White Band Disease-Infected Staghorn Coral. PLoS ONE 10, e0134416. https://doi.org/10.1371/journal.pone.

Gross M. 2013. Hopes and fears for future of coral reefs. Current Biology 23, R635-R637. https://doi. org/10.1016/j.cub.2013.07.062

Johan O, Bengen DG, Zamani NP, Suharsono Sweet MJ. 2015. The Distribution and Abundance of Black Band Disease and White Syndrome in Kepulauan Seribu, Indonesia. HAYATI Journal of Biosciences 22, 105-112. https://doi.org/10.1016/ j.hjb.2015.09.001

Kawaguchi M, Nonaka K, Masuma R, Tomoda H. 2013. New method for isolating antibiotic-producing fungi. The Journal of Antibiotics 66, 17-21. https://doi.org/10.1038/ja.2012.79

Lee OO, Lai PY, Wu H-X, Zhou X, Miao L, Wang H, Qian P-Y. 2012. Marinobacter xestospongiae sp. nov., isolated from the marine sponge Xestospongia testudinaria collected from the Red Sea. International Journal of Systematic and Evolutionary Microbiology 62, 1980-1985.

Luthfi OM, Alviana PZ, Guntur G, Sunardi S, Jauhari A. 2016. Distribution of Massive Porites at Reef Flat in Kondang Merak, Malang, Indonesia. Research Journal of Life Science 3, 23-30.

Mignard S, Flandrois JP. 2006. 16S rRNA sequencing in routine bacterial identification: A 30-month experiment. Journal of Microbiological Methods 67, 574-581. https://doi.org/10.1016/ j.mimet.2006.05.009

Orr JC, Fabry VJ, Aumont O, Bopp L, Doney SC, Feely RA, Gnanadesikan A, Gruber N, Ishida A, Joos F, Key RM, Lindsay K, Maier-Reimer E, Matear R, Monfray P, Mouchet A, Najjar RG, Plattner G-K, Rodgers KB, Sabine CL, Sarmiento JL, Schlitzer R, Slater RD, Totterdell IJ, Weirig M-F., Yamanaka Y, Yool A. 2005. Anthropogenic ocean acidification over the twenty-first century and its impact on calcifying organisms. Nature 437, 681-686. https://doi.org/ 10.1038/nature04095

Putra MIH, Afatta S, Wilson J, Muljadi A, Yusidarta I. 2015. Coral Reef Resilience in 17 Islands Marine Recreation Park, Riung-An Assessment of Functional Groups of Herbivorous Fish and Benthic Substrate. Procedia Environmental Sciences 23, 230-239. https://doi.org/10.1016/j.proenv.2015.01.035

Ravindran J, Raghukumar C, Manikandan B. 2015. Pink-Line Syndrome, in: Diseases of Coral. John Wiley & Sons, Inc pp. 391-395. https://doi.org/10.1002/9781118828502.ch29

Sabdono A, Radjasa OK. 2006. Karakterisasi molekuler bakteri yang berasosiasi dengan penyakit BBD (Black Band Disease) pada Karang Acropora sp. di Perairan Karimun Jawa [Molecular characterization of bacteria associated with BBD (Black Band Disease) on coral Acropora sp. in Karimun Jawa waters]. Ilmu Kelautan 11, 158-162. https://doi.org/10.14710/ik.ijms.11.3.158-162

Sabdono A, Sawonua PH, Kartika AGD, Amelia JM, Radjasa OK. 2015. Coral Diseases in Panjang Island, Java Sea: Diversity of Anti–Pathogenic Bacterial Coral Symbionts. Procedia Chemistry 14, 15-21. https://doi.org/10.1016/j.proche.2015.03.004

Sanders ER. 2012. Aseptic Laboratory Techniques: Plating Methods. Journal of Visualized Experiments 63, 3064. https://doi.org/10.3791/3064

Séré M, Chabanet P, Turquet J, Quod J, Schleyer M. 2015. Identification and prevalence of coral diseases on three Western Indian Ocean coral reefs. Diseases of Aquatic Organisms 114, 249-261. https://doi.org/10.3354/dao02865

Subhan B, Rahmawati F, Arafat D, Nur AB. 2011. Coral health condition of family of fungiidae on Pramuka Island. Jurnal Teknologi Perikanan dan Kelautan 2, 41-50.

Veron JEN, DeVantier LM, Turak E, Green AL, Kininmonth S, Stafford-Smith M, Peterson N. 2011. The Coral Triangle, In: Dubinsky, Z., Stambler, N. (Eds.), Coral Reefs: An Ecosystem in Transition. Springer Netherlands, Dordrecht pp. 47-55. https://doi.org/10.1007/978-94-007-0114-4_5

Veron JEN, Hoegh-Guldberg O, Lenton TM, Lough JM, Obura DO, Pearce-Kelly P, Sheppard CRC, Spalding M, Stafford-Smith MG, Rogers AD. 2009. The coral reef crisis: The critical importance of<350ppm CO2. Marine Pollution Bulletin 58, 1428-1436. https://doi.org/10.1016/j.marpolbul.2009.09.009

Weil E, Irikawa A, Casareto B, Suzuki Y. 2012. Extended geographic distribution of several Indo-Pacific coral reef diseases. Diseases of Aquatic Organisms 98, 163-170. https://doi.org/10.3354 /dao02433

Weil W, Cróquer A, Urreiztieta I. 2009. Yellow band disease compromises the reproductive output of the Caribbean reef-building coral Montastraea faveolata (Anthozoa, Scleractinia). Diseases of Aquatic Organisms 87, 45-55. https://doi.org/10. 3354/dao02103

Weisburg WG, Barns SM, Pelletier DA, Lane DJ. 1991. 16S ribosomal DNA amplification for phylogenetic study. Journal of Bacteriology 173, 697-703.

Zamani NP, Arman A, Lalang. 2016. The Growth Rate of Coral Porites Lutea Relating to the El Niño Phenomena at Tunda Island, Banten Bay, Indonesia. Procedia Environmental Sciences 33, 505-511. https://doi.org/10.1016/j.proenv.2016.03.103