Predictive Analysis of Occurrence of Thrips in Tomato Subject to Weather Parameters Using Machine Learning Techniques

Paper Details

Research Paper 04/05/2024
Views (423) Download (43)
current_issue_feature_image
publication_file

Predictive Analysis of Occurrence of Thrips in Tomato Subject to Weather Parameters Using Machine Learning Techniques

Satish Kumar Yadav, D. Pawar, Latika Yadav, Saurabh Tripathi
Int. J. Biosci.24( 5), 96-106, May 2024.
Certificate: IJB 2024 [Generate Certificate]

Abstract

Thrips (Thripidae) on tomato (Solanum lycopersicum L.) at Rajendranagar, Andhra Pradesh, India is modelled based on field data sets generated during six kharif seasons [2011-18]. The weather variables considered are maximum & minimum temperature (MaxT & MinT) (0C), morning and evening humidity (RHM & RHE) (%), sunshine hours (SS) (hr/d), wind velocity (Wind) (km/hr), total rainfall (RF) (mm) and rainy days (RD). Thrips incidence was higher during 2012 and lowest in 2014. Correlation analyses significant positive influence of maximum temperature and negative influence of wind of one lags, RHM both current and one lags, rainfall one lag of negative influence on thrips. Machine learning techniques namelyAn empirical comparison of the above models [support vector regression (SVR), random forest (RF) and the other statistical models e.g., multiple linear regression (MLR), ridge regression (RR), least absolute shrinkage and selection operator (LASSO), and elastic net (EN)] is based on root mean square error (RMSE). It is observed that, for thrips, the RMSE values of RF and LASSO are less as compared to other competing models. Diebold-Mariano (D-M) test was applied for comparison of forecasting performance among the applied models. It is observed that, predictive accuracy of RF and LASSO is higher than that of other models.

VIEWS 95

Alam T, Tanweer G, Goyal GK. 2007. Stewart Postharvest Review, Packaging and storage of tomato puree and paste. Research article. 3(5), 1-8.

Ammar ED. 1994. Propagative transmission of plant and animal viruses by insects: factors affecting vector specificity and competence. Advances in Disease Vector Research 10, 289-331.

Badnakhe MR, Durbha SS, Jagarlapudi A, Gade RM. 2018. Evaluation of Citrus Gummosis disease dynamics and predictions with weather and inversion-based leaf optical model. Computers and Electronics in Agriculture 155, 130-141.

Breiman L. 2001. Random forests. Machine Learning 45(1), 5–32.

Chatterje S, Hadi AS. 2012. Regression Analysis by Example, John Wiley & Sons, Inc, New York.

Chowdappa P. 2010. Impact of climate change on fungal diseases of Horticultural crops: In: Challenges of climate change-Indian Horticulture (Eds.: H.P. Singh, J.P. Singh and S.S. Lal).  Westville publishing house, New Delhi. 144-15.

Diebold FX, Mariano RS. 1995. Comparing predictive accuracy. Journal of Business and Economic Statistics 13, 253-263.

Efron B, Hastie T, Johnstone I, Tibshirani R. 2004. Least angle regression. The Annals of Statistics. 32, 407–499.

FAOSTAT 2017. Global tomato production. Rome, FAO.

German TL, Ullman DE, Moyer JW. 1992. Tospoviruses: diagnosis, molecular biology, phylogeny, and vector relationships. Annual Review of Phytopathology 30, 315–348.

German TL, Ullman DE, Moyerm JW. 1992. Tospoviruses: diagnosis, molecular biology, phylogeny, and vector relationships. Annual Review of Phytopathology 30, 315–348.

Goldbach R, Peters D. 1994. Possible cause of the emergence of tospovirus diseases. Seminars in Virology 5, 113–120.

Grandillo S, Zamir D, Tanksley SD. 1999. Genetic improvement of processing     tomatoes: A 20 years perspective. Euphytica. 110, 85–97.

Harvey CA, Saborio-Rodríguez M, Martinez-Rodríguez MR, Viguera B, Chain-Guadarrama A. 2018. Climate change impacts and adaptation among smallholder farmers in Central America. Agriculture and Food Security 7(1), 1–20.

Li YH, Xu JY, Tao L, Li XF, Li S, Zeng X, Prot SVM.-2016. A web-server for machine learning prediction of protein functional families from sequence irrespective of similarity. PloS one. 11(8), e0155290.

Liaw A, Wiener M. 2002. Classification and regression by randomForest. R News. 2, 18-22.

Malau S, Lumbanraja P, Pandiangan S, Tarigan JR, Tindaon F. 2018. Performance of Coffea arabica L In Changing Climate of North Sumatra of Indonesia. Scientia Agriculturae Bohemica 49(4), 340–349. https://doi.org/10.2478/sab-2018-0041.

Murphy FA, Fauquet CM, Bishop PHL. Ghabrial SA, Jarvis AW, Martelli GP, Mayo MA, Summers MD. 1995. Virus taxonomy. Sixth report of the international committee on taxonomy of viruses. Archives of Virology (10), 313–314.

Nault LR. 1997. Arthropod transmission of plant viruses: a new synthesis. Annals of Entomological Society of America 90, 521–541.

Paul RK, Vennila S, Singh N, Chandra P, Yadav SK, Sharma OP, Sharma V, K Nisar S, Bhat MN, Rao MS, Prabhakar M. 2018. Seasonal Dynamics of Sterility Mosaic of Pigeonpea and its Prediction using Statistical Models for Banaskantha Region of Gujarat, India. Journal of the Indian Society of Agricultural Statistics 72, 213-223.

Reddy M, Reddy DVR, Appa Rao A. 1968. A new record of virus disease on peanut. Plant Disease Reporter 52, 494-5.

Riley D, Pappu H. 2004. Tactics for management of thrips (Tysanoptera: Tripidae) and Tomato spotted wilt virus in tomato. Journal of Economic Entomology 97, 1648–1658.

Sahoo S, Ta R, Elliott J, Foster I. 2017. Machine learning algorithms for modeling groundwater level changes in agricultural regions of the US. Water Resources Research 53(5), 3878–3895.

Sakimura K. 1961. Field observations on the thrips vector species of the tomato spotted wilt virus in the San Pablo area, California. Plant Disease Reporter 45, 772-776.

Shekoofa A, Emam Y, Shekoufa N, Ebrahimi M, Ebrahimie E. 2014. Determining the most important physiological and agronomic traits contributing to maize grain yield through machine learning algorithms: a new avenue in intelligent agriculture. PloS one9(5), e97288.

Staford CA, Walker GP, Ullman DE. 2011. Infection with a plant virus modifes vector feeding behavior. Proceedings of the National Academy of Sciences of the United States of America 108, 9350–9355, https://doi.org/10.1073/pnas.1100773108.

Tibshirani R. 1996. Regression Shrinkage and Selection via the Lasso. Journal of the Royal Statistical Society 58(B), 267–288.

Todd JM, Ponniah S, Subramanyam CP. 1975. First record of tomato spotted wilt virus from Nilgiris in India. Madras Agricultural Journal 2, 162-3.

Vapnik VN. 2000. The Nature of Statistical Learning Theory. Springer- Verlag, New York.

Verhage FYF, Anten NPR, Sentelhas PC. 2017. Carbon dioxide fertilization off sets negative impacts of climate change on Arabica coffee yield in Brazil. Clim Chang 144(4), 671–685. https://doi.org/10.Journalpone.0211508.

Zou H, Hastie T. 2005. Regularization and variable selection via the elastic net. Journal of the Royal Statistical Society. B67 (2), 301–320.