Study of somaclonal variation in two rice cultivars regenerated from embryo culture, using SSR markers

Paper Details

Research Paper 01/07/2014
Views (590)
current_issue_feature_image
publication_file

Study of somaclonal variation in two rice cultivars regenerated from embryo culture, using SSR markers

Hamed Salehian, Nad-Ali Babaeian, Nad-Ali Bagheri, Behnam Sedaghati, Farzad Banaei-asl, Sara Kabirnataj
Int. J. Agron. & Agric. Res. 5(1), 23-28, June 2014.
Copyright Statement: Copyright 2014; The Author(s).
License: CC BY-NC 4.0

Abstract

Experiments were carried out to induce somaclonal variation in two different Iranian rice cultivars, Neda and Tarom-Jelodar. In order to induce callus, mature embryos were cultured in MS medium as explant, then the obtained calli were transferred to plants regeneration. The leaf samples were provided from regenerated plantlets of each cultivar and both of maternal as a witness, therefore DNA was extracted. Analysis of microsatellite loci was accomplished by extracted DNA from regenerated rice somaclons. In these samples Somaclonal variation were evaluated by means of Polymerase Chain Reaction with ten SSR Primers. Regardless of cultivars, 36.66% of formed bands using these primers were polymorphic, and similarity coefficient ranges, were 0.52 to 1.00.

Bagheri NA, Babaeian-Jelodar NA, and Nematzadeh Gh. 2004. Investigation effects of various media on callus induction and regeneration of some rice (Oryza sativa L.) cultivars by anther culture. Isfahan Research Journal 19, 1-18.

Gao DY, Veronica AV, Bing H, Gai YC, Sun LH. 2009. Detection of DNA changes in somaclonal mutants of rice using SSR markers and transposon display. Plant Cell, Tissue and Organ Culture 98, 187-196.

Kang-Le Zh, Zong-Ming Zh, Guo-Liang W, Yu-Kun L, Zhen-Min X. 1989. Somatic cell culture of rice cultivars with different grain types: Somaclonal variation in some grain and quality characters. Plant Cell, Tissue and Organ Culture 18, 201-208.

Karp A. 1995. Somaclonal variation as a tool for crop improvement. Euphytica 85, 295-302.

Khai TH, Lang NT. 2005. Using SSR marker to identify allele variation of Somaclonal mutants in indica rice. Short communication. OmonRice 13, 121-125.

Larkin P. 2004. Somaclonal variation: origins and causes. Encyclopedia of Plant and Crop Science 1, 1158-1161.

Larkin PJ, Scowcroft WR. 1981. Somaclonal variation – a novel source of variability from cell culture for plant improvement. Theoretical and AppliedGenetics 60, 167-214.

McCouch R., X. Chen., O. Panaud., S. Temnykh., Y. Xu., Y. Gu Cho., N. Huang., T. Ishii. and M. Blair. 1997. Microsatellite marker development, mapping and applications in rice genetics and breeding. Plant Molecular Biology 35, 89-99.

Mohan-Jain S. 2001. Tissue culture-derived variation in crop improvement. Euphytica 118, 153-166.

Rasheed S, Fatima T, Husnain T, Bashir Kh, Riazuddin Sh. 2005. RAPD characterization of somaclonal variation in indica Basmati rice. Pakistan Journal of Botany 37, 249-262.

Salehian H, Babaeian NA, Ranjbar GA, Bagheri NA, Sedaghati B, Banaei F. 2013. Investigation of Somaclonal variation in rice plants derived from embryo culture in the numbers of Tarom-Jelodar and Neda variety by using RAPD markers. International Journal of agriculture and Crop Sciences 6, 938-943.

Seetharam K, Thirumeni S, and Paramasivam K. 2009. Estimation of genetic diversity in rice (Oryza sativa L.) genotypes using SSR markers and morphological characters. African Journal of Biotechnology 8, 2050-2059.

Shamsun NR, Islam Sh, Alam S, Nasiruddin Kh.  2007.  Genetic  polymorphism  in  rice  (Oryza sativa L.) through RAPD analysis. Indian Journal of biotechnology 6, 224-229.

Temnykh S, DeClerck G, Lukashova A, Lipovich L, Cartinhour S, McCouch S. 2001. Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Research 11, 1441-52.

Zong-xiu S, Chang-zhang Zh, Kang-le Zheng, Xiu-fang Q, Ya-ping F. 1983. Somaclonal genetics of rice (Oryza sativa L.). Theoretical and Applied Genetics 67, 67-73.

Related Articles

Phenotypic and molecular screening for resistance in elite cassava clones against cassava brown streak disease (CBSD) in Kenya

Geofrey S. Ombiro, George N. Mose, Elijah M. Ateka, Int. J. Agron. & Agric. Res. 27(6), 1-8, December 2025.

Influence of biochar derived from agricultural waste on soil properties and productivity of carrots (Daucus carota)

Jr. Cipriano M. Ticman*, Princess Joy B. Ticman, Int. J. Agron. & Agric. Res. 27(5), 46-52, November 2025.

Understanding the determinants of pepper production (Capsicum annuum L.) in Niger: Insights into local agricultural dynamics

Halimatou Ousseini Maiga, Oumarou Souleymane, Illiassou Mossi Maiga, Adam Toudou, Int. J. Agron. & Agric. Res. 27(5), 37-45, November 2025.

Gamma radiation-induced variation in wheat (Triticum aestivum L.) mutants for yield and agronomic traits

Amanullah Maree, Munaiza Baloch, Shah Nawaz Mari, Mahboob Ali Sial, Khalil Ahmed Laghari, Jay Kumar Sootaher, Muhammad Jamshaid, Attaullah, Saba Muneer, Int. J. Agron. & Agric. Res. 27(5), 23-36, November 2025.

Farmers perception of the genetic diversity of peppers (Capsicum annuum) in Niger: Between tradition and innovation

Halimatou Ousseini Maiga, Oumarou Souleymane, Illiassou Mossi Maiga, Adam Toudou, Int. J. Agron. & Agric. Res. 27(5), 12-22, November 2025.

Development and reproductive performance of Amblyseius eharai (Acari: Phytoseiidae) fed on different stages of Tyrophagus sp. as a potential factitious prey for mass rearing

Ho L. Quyen, Nguyen T. Thuy, Le T. A. Hong, Bach N. Minh, Le P. Chien, Phan V. Dan, Nguyen D. H. Vu, Tran G. Thinh, Tran C. Tu, Trinh V. Nga, Nguyen T. P. Thao, Int. J. Agron. & Agric. Res. 27(5), 1-11, November 2025.

Effects of tillage and fertilizers on soil and yield characteristics of brri dhan97 rice

Md Khayrul Islam Bashar, Zahidul Islam, Md Ekhlasur Rahman, Md Kayes Mahmud, Md Abul Bashar, Md Zulfiqar, Md Tariqul Islam, Md Musa Mondal, Amit Kumar, Int. J. Agron. & Agric. Res. 27(4), 11-20, October 2025.

Population parameters and exploitation levels of Synodontis membranaceus, a commercially valuable species in the Bagoué River in northern Ivory Coast

Kouyaté Kassoum, Cissé Mamadou, Ahoutou Konan Eric, N’douba Valentin, Int. J. Agron. & Agric. Res. 27(4), 1-10, October 2025.