Study of somaclonal variation in two rice cultivars regenerated from embryo culture, using SSR markers

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Research Paper 01/07/2014
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Study of somaclonal variation in two rice cultivars regenerated from embryo culture, using SSR markers

Hamed Salehian, Nad-Ali Babaeian, Nad-Ali Bagheri, Behnam Sedaghati, Farzad Banaei-asl, Sara Kabirnataj
Int. J. Agron. Agri. Res.5( 1), 23-28, June 2014.
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Abstract

Experiments were carried out to induce somaclonal variation in two different Iranian rice cultivars, Neda and Tarom-Jelodar. In order to induce callus, mature embryos were cultured in MS medium as explant, then the obtained calli were transferred to plants regeneration. The leaf samples were provided from regenerated plantlets of each cultivar and both of maternal as a witness, therefore DNA was extracted. Analysis of microsatellite loci was accomplished by extracted DNA from regenerated rice somaclons. In these samples Somaclonal variation were evaluated by means of Polymerase Chain Reaction with ten SSR Primers. Regardless of cultivars, 36.66% of formed bands using these primers were polymorphic, and similarity coefficient ranges, were 0.52 to 1.00.

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Bagheri NA, Babaeian-Jelodar NA, and Nematzadeh Gh. 2004. Investigation effects of various media on callus induction and regeneration of some rice (Oryza sativa L.) cultivars by anther culture. Isfahan Research Journal 19, 1-18.

Gao DY, Veronica AV, Bing H, Gai YC, Sun LH. 2009. Detection of DNA changes in somaclonal mutants of rice using SSR markers and transposon display. Plant Cell, Tissue and Organ Culture 98, 187-196.

Kang-Le Zh, Zong-Ming Zh, Guo-Liang W, Yu-Kun L, Zhen-Min X. 1989. Somatic cell culture of rice cultivars with different grain types: Somaclonal variation in some grain and quality characters. Plant Cell, Tissue and Organ Culture 18, 201-208.

Karp A. 1995. Somaclonal variation as a tool for crop improvement. Euphytica 85, 295-302.

Khai TH, Lang NT. 2005. Using SSR marker to identify allele variation of Somaclonal mutants in indica rice. Short communication. OmonRice 13, 121-125.

Larkin P. 2004. Somaclonal variation: origins and causes. Encyclopedia of Plant and Crop Science 1, 1158-1161.

Larkin PJ, Scowcroft WR. 1981. Somaclonal variation – a novel source of variability from cell culture for plant improvement. Theoretical and AppliedGenetics 60, 167-214.

McCouch R., X. Chen., O. Panaud., S. Temnykh., Y. Xu., Y. Gu Cho., N. Huang., T. Ishii. and M. Blair. 1997. Microsatellite marker development, mapping and applications in rice genetics and breeding. Plant Molecular Biology 35, 89-99.

Mohan-Jain S. 2001. Tissue culture-derived variation in crop improvement. Euphytica 118, 153-166.

Rasheed S, Fatima T, Husnain T, Bashir Kh, Riazuddin Sh. 2005. RAPD characterization of somaclonal variation in indica Basmati rice. Pakistan Journal of Botany 37, 249-262.

Salehian H, Babaeian NA, Ranjbar GA, Bagheri NA, Sedaghati B, Banaei F. 2013. Investigation of Somaclonal variation in rice plants derived from embryo culture in the numbers of Tarom-Jelodar and Neda variety by using RAPD markers. International Journal of agriculture and Crop Sciences 6, 938-943.

Seetharam K, Thirumeni S, and Paramasivam K. 2009. Estimation of genetic diversity in rice (Oryza sativa L.) genotypes using SSR markers and morphological characters. African Journal of Biotechnology 8, 2050-2059.

Shamsun NR, Islam Sh, Alam S, Nasiruddin Kh.  2007.  Genetic  polymorphism  in  rice  (Oryza sativa L.) through RAPD analysis. Indian Journal of biotechnology 6, 224-229.

Temnykh S, DeClerck G, Lukashova A, Lipovich L, Cartinhour S, McCouch S. 2001. Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Research 11, 1441-52.

Zong-xiu S, Chang-zhang Zh, Kang-le Zheng, Xiu-fang Q, Ya-ping F. 1983. Somaclonal genetics of rice (Oryza sativa L.). Theoretical and Applied Genetics 67, 67-73.