Y-chromosome polymorphisms in two Pakistani ethnic groups and its relationship with neighbouring Indian populations

Paper Details

Research Paper 01/08/2016
Views (2063)
current_issue_feature_image
publication_file

Y-chromosome polymorphisms in two Pakistani ethnic groups and its relationship with neighbouring Indian populations

Muhammad Tariq, Habib Ahmad, Inamullah, Umar Farooq, Tauseef Ahmad
Int. J. Biosci. 9(2), 159-163, August 2016.
Copyright Statement: Copyright 2016; The Author(s).
License: CC BY-NC 4.0

Abstract

The paternally inherited Y-chromosome short tandem repeats (Y-STRs), are excellent tool in inferring modern human evolutionary studies, genetic human identification and genetic genealogy. In the present study a total of 60unrelated male of two ethnic groups (Gujarsand Karlars) from Khyber Pakhtunkhwa province of Pakistan were analyzed using PowerPlex®12 Y-STR loci amplification system (DYS19, DYS385a/b, DYS389I/II, DYS390, DYS391, DYS392, DYS393, DYS437, DYS438 andDYS439), to investigate the genetic polymorphisms and to determine the genetic relationship of two Pakistani populations with three neighboring Indian populations of the same linguistic family. In Gujars a total of 21 haplotypes were identified, 15 of which were unique and 6 haplotype were shared among two or more individuals. The haplotype diversity among Gujars was 0.9701 ± 0.0171, while in Karlars population 19 haplotypes were identified among which 13 were unique haplotypes and 6 were shared among two or more individuals and the observed haplotype diversity value was 0.9563 ± 0.0213.RSTpairwise analysis suggest close genetic relationship between three Indian populations (Andh, Naikpod, Pardhan), while genetically distinct from the two Pakistani Populations (Gujars and Karlars). Results also demonstrate that the 12 Y-STR loci analyzed were highly polymorphic in Gujars and Karlars populations and hence useful for forensic cases and population’s genetic studies.

Allchin B, Allchin R. 1982. The Rise of Civilization in India and Pakistan. Cambridge University Press.

Barger B, Niederstatter H, Erhart D, Gassner C, Gassner H, Schennach H, Parson W. 2012. Tracking the iceman’s scent by high resolution mapping of y haplogroup G in Tyrol (Austria). DNA in Forensics. 8th international Forensic Y-User Workshop.

Casanova M, Leroy P, Boucekkine C, Weissenbach J, Bishop C, Fellous M, Purrello M, Fiori G, Siniscalco M. 1985. A human Y-linked DNA polymorphism and its potential for estimating genetic and evolutionary distance. Science 230, 1403-1406.

Excoffier L, Lischer HEL. 2010. Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources 10, 564-567.

Grimes BF. 1992. “Ethnologue: Languages of the World,” 12th ed., Summer Institute of Linguistics, Inc., Dallas, Texas, USA.

Hussain JA. 1997. History of the peoples of Pakistan towards independence. Oxford University press, Karachi, Pakistan.

Ibbetson D. 1883. Punjab Caste. Sang-e-Meel publications, Lahore 9-16.

Karafet TM, Mendez FL, Meilerman MB, Underhill PA, Zegura SL, Hammer MF. 2008. New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree. Genome Research 185, 830-838.

Kim S, Kim K, Han M, Kim W. 2012. Forensic genetic analysis for the AmpF1STR Yfiler system in the Korean Population. DNA in Forensics 8th International Forensic Y-User Workshop.

Lucotte G, Ngo NY. 1985. p49f, A highly polymorphic probe, that detects Taq1 RFLPs on the human Y chromosome. Nucleic Acids Research 13(22), 8285.

Mellars P. 2006. Going east: new genetic and archaeological perspectives on the modern human colonization of Eurasia. Science 313(5788), 796-800.

Qamar R, Ayub Q, Mohyuddin A, Helgason A, Mazhar K, Mansoor A, Zerjal T, Tyler-Smith C, Mehdi SQ. 2002. Y-chromosomal DNA variation in Pakistan. The American Journal of Human Genetics 70(5), 1107-1124.

Thanseem I, Thangaraj K, Chaubey G, Singh VK, Bhaskar LV, Reddy BM, Reddy AG, Singh L. 2006. Genetic affinities among the lower castes and tribal groups of India: inference from Y chromosome and mitochondrial DNA. BMC genetics 7(1), 1.

Wolpert S. 2000. A new history of India. Oxford University Press, New York.

Related Articles

The role of aberrant glycosylation in autoimmune disease development and progression

Md. Nafis Fuad Prottoy, Sayad Md. Didarul Alam*, Int. J. Biosci. 28(6), 1-12, June 2026.

Molecular surveillance of African swine fever virus in raw pork and blood samples from wet markets and abattoirs in Tuguegarao City, Cagayan

Hannah Lee R. Guirren*, Benjamin Abella, Aira D. Cuarteros, Int. J. Biosci. 28(5), 66-75, May 2026.

Limonene-enhanced botanical fungicides: A sustainable component of integrated tomato powdery mildew management in the tropical region

Edmund F. Luena*, Angela G. Mkindi, Akida I. Meya, Nelson S. Mpumi, Steven R. Belmain, Int. J. Biosci. 28(5), 52-65, May 2026.

Kapwa (Shared identity): The case of being community health workers (CHWs) in Cagayan Province, Philippines

Jay Emmanuel L. Asuncion, Julius T. Capili, Jinky Marie T. Chua*, Pauline Grace P. Casil-Batang, Lara Melissa G. Luis, Dorina D. Sabatin, Krisha Anne A. Hipolito, Ethel Marie M. Mangada, Int. J. Biosci. 28(5), 43-51, May 2026.

Effects of corn silage-based diets on carcass and meat characteristics of Philippine native swamp buffalo (Bubalus bubalis carabanensis)

Vince Randolf R. Sumajit*, Phoebe Lyndia T. Llantada, Ann-Sherly R. Dugyon, Int. J. Biosci. 28(5), 36-42, May 2026.

Assessment of the knowledge, attitude, and practices of frontliners toward community-acquired pneumonia in the Cagayan, Philippines

Jinky Marie T. Chua*, Nikko Alexander S. Pacquing, Ann P. Chua, Ethel Marie M. Mangada, Int. J. Biosci. 28(5), 26-35, May 2026.

Therapeutic potential of protocatechuic acid in in silico evaluation, antioxidant activity, and anti-inflammatory effects for cardiovascular health

Bhavadharseny Uma Shanmugasundaram, Subashini Ragunathan*, Int. J. Biosci. 28(5), 1-10, May 2026.