Isolation and molecular identification of hydrocarbon degrading bacteria from oil-contaminated soil

Paper Details

Research Paper 01/10/2017
Views (434) Download (122)
current_issue_feature_image
publication_file

Isolation and molecular identification of hydrocarbon degrading bacteria from oil-contaminated soil

Fatiha Dilmi, Abdelwaheb Chibani, Khadidja Senouci Rezkallah
Int. J. Biosci.11( 4), 272-283, October 2017.
Certificate: IJB 2017 [Generate Certificate]

Abstract

The spills of hydrocarbon due to the petrochemical industry are major contaminants in the environment. Bioremediation is an effective, economical and environmentally sound treatment. The purpose of our study was to isolate, screen and identified the hydrocarbon degrading bacteria from oil polluted soil. Three oil contaminated soil were collected from Arzew oil refinery, North-west of Algeria. Sixteen bacterial strains were isolated using mineral salt media supplemented with 1% of crude oil; these isolates were screened for their best degradation abilities. Four selected bacterial strains designated as (P2.3, P2.2, S15.1 and E1.1) were identified on the basis of morphological, biochemical and molecular characterization using 16S rRNA gene sequence analysis. The sequences were compared to the closest relative species in the GenBank database of National Centre for Biotechnology Information. The growths rates of the selected isolates were determined using spectrophotometer at 600nm.Based on the partial 16S rRNA gene sequencing and phylogenetic analysis; the isolates were identified as Pseudomonas aeruginosa P2.3, Achromobacter xylosoxidans P2.2, Staphylococcus haemolyticus S15.1 and Enterococcus faecalis E1.1. Results indicated that the isolates strains had effectively utilize crude oil as sole carbon source. Linear increase in Optical Density (OD) was observed between days 4 and 10. Pseudomonas aeruginosa P2.3 and Achromobacter xylosoxidans P2.2 showed the highest growth in media with crude oil. This study indicates that the contaminated soil samples contain a diverse population of hydrocarbon degrading bacteria and these strains could be used for the bioremediation of oil contaminated soil.

VIEWS 25

AL-Adwan MM. 2010. Molecular Detection and Identification of Oil Degrading Bacteria from  Oil-contaminated  Soil in Al-Rwuayshid area (The Northeast Part of Jordan),thesis, University of Yarmouk, Jordan, 29-32.

Atlas RM. 1981. Microbial degradation of petroleum hydrocarbons: an environmental perspective. Microbiological reviews 45, 180-209.

Aubert G. 1978. Méthodes d’analyses des sols, Centre régional de documentation pédagogique de Marseille, 191.

Boboye B, Olukunle O, Adetuyi F. 2010. Degradative activity of bacteria isolated from hydrocarbon-polluted site in Ilaje, Ondo State, Nigeria. African Journal of Microbiology Research4, 2484-2491.

Boontawan A, Boontawan P. 2011. Isolation and characterization of Jatropha oildegradation by Enterococcus faecalis and Burkholderia cenocepacia W-1 under anaerobic condition. African Journal of Biotechnology 10, 13841-13851. https://doi.org/10.5897/AJB10.1720

Bouderhem  A, Ould  EL  Hadj  KHelil A, DJrarbaoui  AN, Aroussi A. 2016. The Use of Terrestrial Indigenous Bacterial Strains In the Bioremediation of Oil Contaminated Soils.Advances in Environmental Biology 10, 259-265.

Chadli A, Baba Hamed MB, Kihal M. 2013. Characterization of indigenous and adapted hydrocarbon degrading bacteria isolated from landfill leachate from ain temouchent engineered landfill, Algeria. Journal of Environmental Science and Engineering A2, 537-548.

Chaussod R, Nicolardot B, Catroux G. 1986. Mesure en routine de la biomasse microbienne des sols par la méthode de fumigation au chloroforme.Science du sol 2, 201-211.

Chaussod R, Zuvia M, Breuil MC, Hétier JM. 1992. Biomasse microbienne et statut organique des sols tropicaux: exemple d’un sol vénézuélien des Llanos sous différents systèmes de culture.Cahiers ORSTOM. Série pédologie 27, 59-67.

Das K, Mukherjee AK. 2007. Crude petroleum-oil biodegradation efficiency of Bacillus subtilis and Pseudomonas aeruginosa strains isolated from a petroleum-oil contaminated soil from North-East India. Bioresource technology 98, 1339-1345.

Das N, Chandran P. 2010. Microbial degradation of petroleum hydrocarbon contaminants: an overview. Biotechnology research international2011, 1-13.

De Vasconcellos SP, Crespim E, da Cruz GF, Senatore DB, Simioni KCM, dos Santos Neto EV, Marsaioli AJ, de Oliveira VM. 2009. Isolation, biodegradation ability and molecular detection of hydrocarbon degrading bacteria in petroleum samples from a Brazilian offshore basin.Organic Geochemistry 40, 574-588.

Ebrahimi M, Sarikhani M, Fallah R. 2012. Assessment of biodegradation efficiency of some isolated bacteria from oilcontaminated sites in solid and liquid media containing oil-compounds.Internal Research Journal of Applied Basic Sciences3, 138-147.

Erdogan EE, Sahin F, Karaca A. 2012. Determination of petroleum-degrading bacteria isolated from crude oil-contaminated soil in Turkey.African Journal of Biotechnology 11, 4853-4859. https://doi.org/10.5897/AJB10.2239

Fardoux J, Fernandes P, Niane-Badiane A, Chotte J. 2000. Effet du séchage d’échantillons d’un sol ferrugineux tropical sur la détermination de la biomasse microbienne: Comparaison de deux methodes biocidales de reference. Etude et Gestion des Sols 7, 385-394.

Greene EA, Kay JG, Jaber K, Stehmeier LG, Voordouw G. 2000. Composition of soil microbial communities enriched on a mixture of aromatic hydrocarbons.Applied and environmental microbiology 66, 5282-5289.

Guermouche M, Bensalah F, Gray N. 2013. Application of molecular methods as a biomarker in bioremediation studies.International Journal of Biotechnology Applications 5, 147-154.

Hamzah A, Rabu A, Azmy R, Yussoff NA. 2010. Isolation and characterization of bacteria degrading Sumandak and South Angsi oils.Sains Malaysiana 39, 161-168.

Holliger C, Gaspard S, Glod G, Heijman C, Schumacher W, Schwarzenbach RP, Vazquez F. 1997. Contaminated environments in the subsurface and bioremediation: organic contaminants.FEMS Microbiology Reviews 20, 517-523.

Holt JG, Krieg NR, Sneath PHA, Stanley JT, William ST. 1994. Bergey’s Manual of Determinative Bacteriology, William and Wilkins, Baltimore.

Jukes TH, Cantor CR. 1969. Evolution of protein molecules. In Munro HN, Editor, Mammalian Protein Metabolism, Academic Press, New York.

Jyothi K, Surendra Bk, Nancy CK, Amita K. 2012. Identification and Isolation of Hydrocarbon Degrading Bacteriaby Molecular Characterization. Helix 2, 105-111.

Kaboré-Ouédraogo PW, Savadogo PW, Ouattara CAT, Savadogo A, Traoré AS. 2010. Etude de la Bio-dépollution de Sols contaminés par les Hydrocarbures au Burkina Faso.Journal de la Société Ouest-Africaine de Chimie 30, 19-28.

Kvenvolden K, Cooper C. 2003. Natural seepage of crude oil into the marine environment.Geo-Marine Letters 23, 140-146.

Leahy JG, Colwell RR. 1990. Microbial degradation of hydrocarbons in the environment. Microbiological reviews 54, 305-315.

Liao J, Wang J, Huang Y. 2015. Bacterial community features are shaped by geographic location, physicochemical properties, and oil contamination of soil in main oil fields of China. Microbial ecology 70, 380-389.

Lin J, Singh C. 2008. Isolation and characterization of diesel oil degrading indigenous microrganisms in Kwazulu-Natal, South Africa. African Journal of Biotechnology 7, 1927-1932.

Mancera-Lopez M, Rodriguez-Casasola M, Rios-Leal E, Esparza Garcia F, Chavez Gomez B, Rodriguez-Vazquez R, Barrera-Cortes J. 2007. Fungi and Bacteria Isolated from Two Highly Polluted Soils for Hydrocarbon Degradation.Acta Chimica Slovenica 54, 201-209.

Meenakshisundaram M, Bharathiraja C. 2014. Isolation and molecular identification of hydrocarbon degrading bacteria from oil contaminated soils from Tamilnadu.Indian Journal of Applied Research 4, 39-42.

Mulkins-Phillips G, Stewart JE. 1974. Distribution of hydrocarbon-utilizing bacteria in Northwestern Atlantic waters and coastal sediments.Canadian Journal of Microbiology20, 955-962.

Obuotor T, Sakariyau A, Bada B. 2016. Enhanced Biodegradation of Spent Engine Oil Contaminated Soil using Organic Wastes.Applied Environmental Research 38, 27-38.

Palanisamy N, Ramya J, Kumar S, Vasanthi N, Chandran P, Khan S. 2014. Diesel biodegradation capacities of indigenous bacterial species isolated from diesel contaminated soil. Journal of environmental health science and engineering 12, 142.

Pétard J. 1993. Les methodes d’analyse. I. Analyses des sols. Notes techniques, laboratoire commun d’analyses 5, Orstom Nouméa.

Rahman K, Rahman TJ, Kourkoutas Y, Petsas I, Marchant R, Banat I. 2003. Enhanced bioremediation of n-alkane in petroleum sludge using bacterial consortium amended with rhamnolipid and micronutrients.Bioresource technology 90, 159-168.

Saitou N, Nei M. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees.Molecular Biology and Evolution 4, 406-425.

Salam LB, Obayori OS, Akashoro OS, Okogie GO. 2011. Biodegradation of bonny light crude oil by bacteria isolated from contaminated soil. International Journal of Agriculture and Biology 13, 245-250.

Scherrer P, Mille G. 1990.Biodegradation of crude oil in experimentally-polluted clayey and sandy mangrove soils. Oil and Chemical Pollution 6, 163-176. https://doi.org/10.1016/S0269-8579(05)80022-X

Sibi G, Pant G, Simaria C. 2015. Characterization and Evaluation of Polycyclic Aromatic Hydrocarbon (PAH) Degrading Bacteria Isolated from Oil Contaminated Soil. Applied Microbiology: Open  Access 1. https://doi.org/10.4172/2471-9315.1000104

Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.Molecular Biology and Evolution 30, 2725-2729.

Verma S, Bhargava R, Pruthi V. 2006. Oily sludge degradation by bacteria from Ankleshwar, India. International biodeterioration and biodegradation 57, 207-213.