Isolation of biofloc-associated bacteria from the rearing water of whiteleg shrimp, Penaeus vannamei in nursery tanks

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Research Paper 09/02/2023
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Isolation of biofloc-associated bacteria from the rearing water of whiteleg shrimp, Penaeus vannamei in nursery tanks

Ermae M. Liprado, Belle Grace T. Vargas, Angelica B. Villarosa, Eva Grace B. Chavez, Christopher Marlowe A. Caipang
Int. J. Biosci.22( 2), 183-191, February 2023.
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Abstract

We aimed to determine the water quality of the biofloc-based nursery tank system and to isolate and characterize biofloc-associated bacteria from the rearing water of the whiteleg shrimp, Penaeus vannamei, during the nursery production phase in response to recommendations to further study biofloc composition. Serially-diluted biofloc water samples from a shrimp nursery tank were spread onto Tryptic Soy Agar (TSA) plates, incubated for approximately 48 h at 28℃ and observed for bacterial growth. Bacterial colonies that exhibited varying morphology were re-streaked onto fresh TSA plates to obtain pure colonies. Bacterial isolates were subjected to morphological tests following standard methods. Molecular characterization of the bacterial isolates was done by amplification and sequencing of the 16S rRNA. Water quality parameters including dissolved oxygen, pH, salinity, ammonia-N, nitrite-N and nitrate-N, were monitored twice daily using commercially available kits. The isolated bacterial colonies showed variations in the margin but were all similar in opacity. The colors of the bacterial colonies ranged from light yellow to white. Staphylococcus, Pseudomonas, and a putative Bacillus velezensis from the rearing water of a biofloc-based nursery tank of whiteleg shrimp were identified. During the one-month nursery production phase, levels of the nitrogenous wastes (total ammonia-N, nitrite and nitrate) were within acceptable levels required for shrimp farming.

VIEWS 477

Aravind R, Sandeep KP, Panigrahi A. 2019. Role of microalgae, isolation and identification in biofloc culture system. Biofloc Technology for Nursery and Growout Aquaculture 22(32), 125.

Ayazo-Genes J, Pertuz Buelvas V, Jiménez Velásquez C, Espinosa Araujo J, AtencioGarcía V, Prieto-Guevara M. 2019. Planktonic and bacterial communities associated with the culture of bocachico Prochilodus magdalenae with biofloc technology. Magazine MVZ Córdoba 24, 7209-7217. http://dx.doi.org/10.21897/rmvz.1648.

Bianciotto V, Lumini E, Bonfante P, Vandamme P. 2003. ‘Candidatus Glomeribacter gigasporarum’gen. nov., sp. nov., an endosymbiont of arbuscular mycorrhizal fungi. International Journal of Systematic and Evolutionary Microbiology 53(1), 121-124. http://dx.doi.org/10.1099/ijs.0.02382-0.

Caipang CM, Choo HX, Bai Z, Huang H, Lay-yag Clara M. 2015. Viability of sweet potato flour as carbon source for the production of biofloc in freshwater culture of tilapia, Oreochromis sp. International Aquatic Research 7, 329–336. http://dx.doi.org/10.1007/s40071-015-0117-7.

Caipang CM, Trebol KMP, Abeto MJS, Coloso RM, Pakingking Jr R, Calpe AT, Deocampo Jr JE. 2022. An innovative biofloc technology for the nursery production of Pacific whiteleg shrimp, Penaeus vannamei in tanks. International Journal of Biosciences 21(4), 71-79. http://dx.doi.org/10.12692/ijb/21.4.71-79.

Cardona E, Gueguen Y, Magré K, Lorgeoux B, Piquemal D, Pierrat F, Saulnier  D. 2016. Bacterial community characterization of water and intestine of the shrimp Litopenaeus stylirostris in a biofloc system. BMC Microbiology 16, 1-9. http://dx.doi.org/10.1186/s12866-016-0770-z.

Crab R, Lambert A, Defoirdt T, Bossier P, and Verstraete W. 2010. The application of bioflocs technology to protect brine shrimp (Artemia franciscana) from pathogenic Vibrio harveyi. Journal of Applied Microbiology 109, 643– 1649. http://dx.doi.org/10.111/j.1365-2672.2010.04791.x.

Dayal Syama J, Ambasankar K, Kumaraguru Vasagam KP, Panigrahi A. 2019. Nutrition and feeding strategy in a biofloc system. Training Manual on Biofloc Technology for Nursery and Growout Aquaculture 15, 75-81.

Dou L, Chen W, Pan L, Huang F. 2021. Characterization of Vibrio sp. strain AB15 and Pseudomonas fluorescens strain NB14 from the biofloc of shrimp culture ponds capable of high ammonia and nitrite removal efficiency. Journal of the World Aquaculture Society 52, 843–858. http://dx.doi.org/10.1111/jwas.12789

Esparza-Leal HM, Xavier JA, Wasielesky Jr. W. 2016. Performance of Litopenaeus vannamei postlarvae reared in indoor nursery tanks under biofloc conditions at different salinities and zero-water exchange. Aquaculture International 24, 1435-1447. http://dx.doi.org/10.1007/s10499-016-0001-5.

Holt JG, Krieg NR, Sneath PHA, Staley JT, Williams ST. 2000. Bergey’s Manual of Determinative Bacteriology. Lippincott Williams and Wilkins, New York, USA.

Jang IK, Kim SK, Jo JC. 2015. Characterization of bacterial community in biofloc farms. https://www.aesweb.org/presentations/biofloc/neworleans2015/Characterization%20of%20bacterial%20community%20in%20biofloc%20fams.pdf

Khalid F, Khalid A, Fu Y, Hu Q, Zheng Y, Khan S, Wang Z. 2021.Potential of Bacillus velezensis as a probiotic in animal feed: a review. Journal of Microbiology 59, 627-633.

Khanjani MH, Sharifinia M. 2020. Biofloc technology as a promising tool to improve aquaculture production. Reviews in Aquaculture 12 (3), 1836-1850. https://onlinelibrary.wiley.com/doi/abs/10.1111/raq.1241

Kurniawan K, Wheeler R, Dann L, Mitchell J. 2020. Investigating the effects of urban input on the abundance and diversity of potential bio-floc forming bacteria in the River Murray, South Australia. IOP Conference Series: Earth and Environmental Science 521(1), 012015. http://dx.doi.org/10.1088/1755-1315/521/1/012015.

Lingojwar D. 2016 Re: What is the minimum percentage of identity required by BLAST to tentatively determine new species of bacteria?. Retrieved from: https://www.researchgate.net/post/

Llario F, Rodilla M, Escrivá J, Falco S, Sebastiá-Frasquet MT. 2019. Phytoplankton evolution during the creation of a biofloc system for shrimp culture. International Journal Environmental Science & Technology 16, 211–222. http://dx.doi.org/10.1007/s13762-018-1655-5.

Lu Q, Serajuddin M. (editors). 2020. Novel biofloc technology (BFT) for ammonia assimilation and reuse in aquaculture. In: Emerging Technologies, Environment and Research for Sustainable Aquaculture. Intech Open Limited, United Kingdom. https://doi.org/10.5772/intechopen.82887.

Manan H, Hwei Zhong Moh J, Kasan NA, Suratman S, Ikhwanuddin M. 2016. Identification of biofloc microscopic composition as the natural bioremediation in zero water exchange of Pacific white shrimp, Penaeus vannamei, culture in closed hatchery system. Applied Water Science 7, 2437-2446. http://dx.doi.org/10.1007/s13201-016-0421-4.

Manan H, Rosland NA, Deris ZM, Hashim NFC, Kasan NA, Ikhwanuddin M, Suloma, A, Fauzan F. 2022. 16S rRNA sequences of Exiguobacterium spp. bacteria dominant in a biofloc pond cultured with whiteleg shrimp, Penaeus vannamei. Aquaculture Research 53, 2029–2041. https://doi.org/10.1111/are.15731

Panigrahi A, Saranya C, Sundaram  M, Vinoth Kannan SR, Das R, Satish Kumar R, Rajesh P, Otta SK. 2018. Carbon: Nitrogen (C:N) ratio level variation influences microbial community of the system and growth as well as immunity of shrimp (Litopenaeus vannamei) in biofloc based culture system. Fish & Shellfish Immunology 81, 329-337. https://doi.org/10.1016/j.fsi.2018.07.035.

Panigrahi A, Otta SK, Kumaraguru Vasagam KP, Shyne Anand PS, Biju IF, Aravind R. 2019. Training manual on Biofloc technology for nursery and growout aquaculture. CIBA TM series 2019 15, 172 p.

Poulsen CS, Kaas RS, Aarestrup FM, Pamp SJ. 2021. Standard sample storage conditions have an impact on inferred microbiome composition and antimicrobial resistance patterns. Microbiology Spectrum 9, 1-19 p. https://doi.org/10.1128/Spectrum.01387-21

Putra I, Effendi I, Lukistyowati I, Tang UM, Fauzi M, Suharman I, Muchlisin ZA. 2020. Effect of different biofloc starters on ammonia, nitrate, and nitrite concentrations in the cultured tilapia Oreochromis niloticus system. F1000Research 9, 1-13p. https://doi.org/10.12688/f1000research.22977.3

Rajkumar M, Pandey PK, Aravind R, Vennila A, Bharti V, Purushothaman CS. 2015. Effect of different biofloc system on water quality, biofloc composition and growth performance in Litopenaeus vannamei (Boone, 1931). Aquaculture Research 47, 3432-3444. https://doi.org/10.1111/are.12792

Schlaberg R, Simmon KE, Fisher MA. 2012. A systematic approach for discovering novel, clinically relevant bacteria. Emerging Infectious Diseases 18, 422–430. https://doi.org/10.3201/eid1803.111481.

Soares DCE, Abreu J, Lucinda J, Sousa O. 2021. Preliminary evaluation of the use of bacteria isolated from the digestive tract of shrimp Litopenaeus vannamei as a source to accelerate the process of formation and development of bioflocs. Acta Scientiarum: Animal Sciences 43, 1-7p. http://dx.doi.org/10.4025/actascianimsci.v43i1.52219

Thurlow CM, Williams MA, Carrias A, Ran C, Newman M, Tweedie J, Allison E, Jescovitch L, Wilson A, Terhune J, Liles M.  2019. Bacillus velezensis AP193 exerts probiotic effects in channel catfish (Ictalurus punctatus) and reduces aquaculture pond eutrophication. Aquaculture 503, 347–356. https://doi.org/10.1016/j.aquaculture.2018.11.051.

Trung Tran T, Bott NJ, Dai Lam N, Trung Nguyen N, Hoang Thi Dang O, Hoang Le D, Tung Le L, Hoang Chu H. 2019. The role of Pseudomonas in heterotrophic nitrification: a case study on shrimp ponds (Litopenaeus vannamei) in Soc Trang Province. Microorganisms 7(6), 155. https://doi.org/10.3390/microorganisms7060155

Tuan LC, Thanh LTH, Duc Huy N, Thuy Trang DT, Nhat Le BN, Nhat Linh NL. 2021.. Antagonistic activity against pathogenic vibrio isolates of bioflocculant-producing bacteria isolated from shrimp ponds. Pakistan Journal of Biological Sciences 24, 1322–1332. http://dx.doi.org/10.3923/pjbs.2021.1322.1332

Zhao P, Huang J, Wang XH, Song XL, Yang C-H, Zhang XG, Wang GC. 2012. The application of bioflocs technology in high-intensive, zero exchange farming systems of Marsupenaeus japonicus. Aquaculture 354-355, 97–106. http://dx.doi.org/10.1016/j.aquaculture.2012.03.034